A systems-oriented analysis of the grapevine R2R3-MYB transcription factor family uncovers new insights into the regulation of stilbene accumulation

Structural and functional annotation of the MADS-box transcription factor family in grapevine

(2016) Jérôme Grimplet et al.   BMC GENOMICS

Assembly of the draft genome of buckwheat and its applications in identifying agronomically useful genes

(2016) Yasuo Yasui et al.   DNA RESEARCH

Identification, cloning and characterization of R2R3-MYB gene family in canola (Brassica napusL.) identify a novel member modulating ROS accumulation and hypersensitive-like cell death

(2016) Bisi Chen et al.   DNA RESEARCH

TheVviMYB80Gene is Abnormally Expressed inVitis viniferaL. cv. ‘Zhong Shan Hong’ and its Expression in Tobacco Driven by the 35S Promoter Causes Male Sterility

(2016) Huan Zheng et al.   PLANT AND CELL PHYSIOLOGY

Exploration of alternative splicing events in ten different grapevine cultivars

(2015) Emilio Potenza et al.   BMC GENOMICS

Network-assisted crop systems genetics: network inference and integrative analysis

(2015) Tak Lee et al.   CURRENT OPINION IN PLANT BIOLOGY

New candidate genes for the fine regulation of the colour of grapes

(2015) Laura Costantini et al.   JOURNAL OF EXPERIMENTAL BOTANY

Regulation of MYB and bHLH Transcription Factors: A Glance at the Protein Level

(2015) Marie Pireyre et al.   Molecular Plant

Transcriptional networks in plant immunity

(2015) Kenichi Tsuda et al.   NEW PHYTOLOGIST

EjAP2-1, anAP2/ERFgene, is a novel regulator of fruit lignification induced by chilling injury, via interaction withEjMYBtranscription factors

(2015) Jiao-ke Zeng et al.   PLANT BIOTECHNOLOGY JOURNAL

Regulation of Jasmonate-Mediated Stamen Development and Seed Production by a bHLH-MYB Complex in Arabidopsis

(2015) Tiancong Qi et al.   PLANT CELL

The Phenylpropanoid Pathway Is Controlled at Different Branches by a Set of R2R3-MYB C2 Repressors in Grapevine

(2015) Erika Cavallini et al.   PLANT PHYSIOLOGY

Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast

(2015) Zsolt Kelemen et al.   PLoS One

Subspecialization of R2R3-MYB Repressors for Anthocyanin and Proanthocyanidin Regulation in Forage Legumes

(2015) Nick W. Albert   Frontiers in Plant Science

The Evolutionary History of R2R3-MYB Proteins Across 50 Eukaryotes: New Insights Into Subfamily Classification and Expansion

(2015) Hai Du et al.   Scientific Reports

The grapevine gene nomenclature system

(2014) Jérôme Grimplet et al.   BMC GENOMICS

Annotation of gene function in citrus using gene expression information and co-expression networks

(2014) Darren CJ Wong et al.   BMC PLANT BIOLOGY

Solar ultraviolet radiation is necessary to enhance grapevine fruit ripening transcriptional and phenolic responses

(2014) Pablo Carbonell-Bejerano et al.   BMC PLANT BIOLOGY

Metabolic effects of elevated temperature on organic acid degradation in ripening Vitis vinifera fruit

(2014) C. Sweetman et al.   JOURNAL OF EXPERIMENTAL BOTANY

Functional characterization of a new grapevine MYB transcription factor and regulation of proanthocyanidin biosynthesis in grapes

(2014) Kazuya Koyama et al.   JOURNAL OF EXPERIMENTAL BOTANY

TheEucalyptus grandisR2R3-MYB transcription factor family: evidence for woody growth-related evolution and function

(2014) Marçal Soler et al.   NEW PHYTOLOGIST

Integrated Network Analysis Identifies Fight-Club Nodes as a Class of Hubs Encompassing Key Putative Switch Genes That Induce Major Transcriptome Reprogramming during Grapevine Development

(2014) Maria Concetta Palumbo et al.   PLANT CELL

ArabidopsisDELLA and JAZ Proteins Bind the WD-Repeat/bHLH/MYB Complex to Modulate Gibberellin and Jasmonate Signaling Synergy

(2014) Tiancong Qi et al.   PLANT CELL

Inspection of the Grapevine BURP Superfamily Highlights an Expansion of RD22 Genes with Distinctive Expression Features in Berry Development and ABA-Mediated Stress Responses

(2014) José Tomás Matus et al.   PLoS One

DNA-binding specificities of plant transcription factors and their potential to define target genes

(2014) José M. Franco-Zorrilla et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity

(2013) Luca Venturini et al.   BMC GENOMICS

VTCdb: a gene co-expression database for the crop species Vitis vinifera (grapevine)

(2013) Darren CJ Wong et al.   BMC GENOMICS

A negative MYB regulator of proanthocyanidin accumulation, identified through expression quantitative locus mapping in the grape berry

(2013) Yung-Fen Huang et al.   NEW PHYTOLOGIST

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

ATTED-II in 2014: Evaluation of Gene Coexpression in Agriculturally Important Plants

(2013) Takeshi Obayashi et al.   PLANT AND CELL PHYSIOLOGY

MIXTA-Like Transcription Factors and WAX INDUCER1/SHINE1 Coordinately Regulate Cuticle Development inArabidopsisandTorenia fournieri

(2013) Yoshimi Oshima et al.   PLANT CELL

Alternative Splicing at the Intersection of Biological Timing, Development, and Stress Responses

(2013) D. Staiger et al.   PLANT CELL

The R2R3-MYB Transcription Factors MYB14 and MYB15 Regulate Stilbene Biosynthesis in Vitis vinifera

(2013) J. Holl et al.   PLANT CELL

Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data

(2013) MARC LOHSE et al.   PLANT CELL AND ENVIRONMENT

Molecular Signatures in Arabidopsis thaliana in Response to Insect Attack and Bacterial Infection

(2013) Pankaj Barah et al.   PLoS One

Incorporating Motif Analysis into Gene Co-expression Networks Reveals Novel Modular Expression Pattern and New Signaling Pathways

(2013) Shisong Ma et al.   PLoS Genetics

Genome-wide analysis of the grapevine stilbene synthase multigenic family: genomic organization and expression profiles upon biotic and abiotic stresses

(2012) Alessandro Vannozzi et al.   BMC PLANT BIOLOGY

NCBI GEO: archive for functional genomics data sets—update

(2012) Tanya Barrett et al.   NUCLEIC ACIDS RESEARCH

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

(2012) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

AtMYB14 Regulates Cold Tolerance in Arabidopsis

(2012) Yan Chen et al.   PLANT MOLECULAR BIOLOGY REPORTER

Structural, Functional, and Evolutionary Analysis of the Unusually Large Stilbene Synthase Gene Family in Grapevine

(2012) C. Parage et al.   PLANT PHYSIOLOGY

The interaction between MYB proteins and their target DNA binding sites

(2011) Michael B. Prouse et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

The grapevine guard cell-related VvMYB60 transcription factor is involved in the regulation of stomatal activity and is differentially expressed in response to ABA and osmotic stress

(2011) Massimo Galbiati et al.   BMC PLANT BIOLOGY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

MYB46 and MYB83 Bind to the SMRE Sites and Directly Activate a Suite of Transcription Factors and Secondary Wall Biosynthetic Genes

(2011) Ruiqin Zhong et al.   PLANT AND CELL PHYSIOLOGY

PlaNet: Combined Sequence and Expression Comparisons across Plant Networks Derived from Seven Species

(2011) M. Mutwil et al.   PLANT CELL

Cis-regulatory code of stress-responsive transcription in Arabidopsis thaliana

(2011) C. Zou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A framework for oligonucleotide microarray preprocessing

(2010) Benilton S. Carvalho et al.   BIOINFORMATICS

Characterization of Transcriptional Complexity during Berry Development in Vitis vinifera Using RNA-Seq

(2010) S. Zenoni et al.   PLANT PHYSIOLOGY

MYB transcription factors in Arabidopsis

(2010) Christian Dubos et al.   TRENDS IN PLANT SCIENCE

Bias in Plant Gene Content Following Different Sorts of Duplication: Tandem, Whole-Genome, Segmental, or by Transposition

(2009) Michael Freeling   Annual Review of Plant Biology

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Rank of Correlation Coefficient as a Comparable Measure for Biological Significance of Gene Coexpression

(2009) T. Obayashi et al.   DNA RESEARCH

Genome-wide mapping of alternative splicing in Arabidopsis thaliana

(2009) S. A. Filichkin et al.   GENOME RESEARCH

The Arabidopsis MYB5 Transcription Factor Regulates Mucilage Synthesis, Seed Coat Development, and Trichome Morphogenesis

(2009) S. F. Li et al.   PLANT CELL

A Novel Cation-Dependent O-Methyltransferase Involved in Anthocyanin Methylation in Grapevine

(2009) P. Hugueney et al.   PLANT PHYSIOLOGY

Analysis of the grape MYB R2R3 subfamily reveals expanded wine quality-related clades and conserved gene structure organization across Vitis and Arabidopsis genomes

(2008) José Matus et al.   BMC PLANT BIOLOGY

Purification, molecular cloning, and characterization of glutathione S-transferases (GSTs) from pigmented Vitis vinifera L. cell suspension cultures as putative anthocyanin transport proteins

(2008) Simon Conn et al.   JOURNAL OF EXPERIMENTAL BOTANY

CDD: specific functional annotation with the Conserved Domain Database

(2008) A. Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

A MYB Transcription Factor Regulates Very-Long-Chain Fatty Acid Biosynthesis for Activation of the Hypersensitive Cell Death Response in Arabidopsis

(2008) S. Raffaele et al.   PLANT CELL

A Battery of Transcription Factors Involved in the Regulation of Secondary Cell Wall Biosynthesis in Arabidopsis

(2008) R. Zhong et al.   PLANT CELL

Ectopic Expression of VvMybPA2 Promotes Proanthocyanidin Biosynthesis in Grapevine and Suggests Additional Targets in the Pathway

(2008) N. Terrier et al.   PLANT PHYSIOLOGY

The Transcription Factor VvMYB5b Contributes to the Regulation of Anthocyanin and Proanthocyanidin Biosynthesis in Developing Grape Berries

(2008) L. Deluc et al.   PLANT PHYSIOLOGY

Expansion and Diversification of the Populus R2R3-MYB Family of Transcription Factors

(2008) O. Wilkins et al.   PLANT PHYSIOLOGY

Genome-Wide Analysis of the “Cut-and-Paste” Transposons of Grapevine

(2008) Andrej Benjak et al.   PLoS One

A Probabilistic Model of Local Sequence Alignment That Simplifies Statistical Significance Estimation

(2008) Sean R. Eddy   PLoS Computational Biology