Role of CsrA in stress responses and metabolism important for Salmonella virulence revealed by integrated transcriptomics
出版年份 2019 全文链接
标题
Role of CsrA in stress responses and metabolism important for Salmonella virulence revealed by integrated transcriptomics
作者
关键词
Salmonella, Gene expression, Protein translation, Gene regulation, Regulator genes, Gastrointestinal tract, Salmonellosis, RNA stability
出版物
PLoS One
Volume 14, Issue 1, Pages e0211430
出版商
Public Library of Science (PLoS)
发表日期
2019-01-26
DOI
10.1371/journal.pone.0211430
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注意：仅列出部分参考文献，下载原文获取全部文献信息。- Measurement of Fructose–Asparagine Concentrations in Human and Animal Foods
- (2017) Jikang Wu et al. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
- Alternative pathways for Escherichia coli biofilm formation revealed by sRNA overproduction
- (2017) Ashley Parker et al. MOLECULAR MICROBIOLOGY
- Host cell attachment elicits posttranscriptional regulation in infecting enteropathogenic bacteria
- (2017) Naama Katsowich et al. SCIENCE
- Global role of the bacterial post-transcriptional regulator CsrA revealed by integrated transcriptomics
- (2017) Anastasia H. Potts et al. Nature Communications
- Acylation of the Type 3 Secretion System Translocon Using a Dedicated Acyl Carrier Protein
- (2017) Julie P. Viala et al. PLoS Genetics
- The transcriptional regulator SsrB is involved in a molecular switch controlling virulence lifestyles of Salmonella
- (2017) Deyanira Pérez-Morales et al. PLoS Pathogens
- Respiration of Microbiota-Derived 1,2-propanediol Drives Salmonella Expansion during Colitis
- (2017) Franziska Faber et al. PLoS Pathogens
- What the SIF Is Happening—The Role of Intracellular Salmonella-Induced Filaments
- (2017) Katelyn Knuff et al. Frontiers in Cellular and Infection Microbiology
- Depletion of Butyrate-Producing Clostridia from the Gut Microbiota Drives an Aerobic Luminal Expansion of Salmonella
- (2016) Fabian Rivera-Chávez et al. Cell Host & Microbe
- Bacterial Stress Responses during Host Infection
- (2016) Ferric C. Fang et al. Cell Host & Microbe
- Global RNA recognition patterns of post‐transcriptional regulators Hfq and CsrA revealed by UV crosslinkingin vivo
- (2016) Erik Holmqvist et al. EMBO JOURNAL
- Host-mediated sugar oxidation promotes post-antibiotic pathogen expansion
- (2016) Franziska Faber et al. NATURE
- Antagonistic control of the turnover pathway for the global regulatory sRNA CsrB by the CsrA and CsrD proteins
- (2016) Christopher A. Vakulskas et al. NUCLEIC ACIDS RESEARCH
- Cytochrome bd -Dependent Bioenergetics and Antinitrosative Defenses in Salmonella Pathogenesis
- (2016) Jessica Jones-Carson et al. mBio
- Energy Taxis toward Host-Derived Nitrate Supports a Salmonella Pathogenicity Island 1-Independent Mechanism of Invasion
- (2016) Fabian Rivera-Chávez et al. mBio
- The horizontally-acquired response regulator SsrB drives a Salmonella lifestyle switch by relieving biofilm silencing
- (2016) Stuti K Desai et al. eLife
- The Csr system regulates genome-wide mRNA stability and transcription and thus gene expression in Escherichia coli
- (2016) Thomas Esquerré et al. Scientific Reports
- The Pyromaniac Inside You:SalmonellaMetabolism in the Host Gut
- (2015) Fabian Rivera-Chávez et al. Annual Review of Microbiology
- Global Transcriptome and Mutagenic Analyses of the Acid Tolerance Response of Salmonella enterica Serovar Typhimurium
- (2015) Daniel Ryan et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Genome-wide investigation of mRNA lifetime determinants in Escherichia coli cells cultured at different growth rates
- (2015) Thomas Esquerré et al. BMC GENOMICS
- The Periplasmic Nitrate Reductase NapABC Supports Luminal Growth of Salmonella enterica Serovar Typhimurium during Colitis
- (2015) Christopher A. Lopez et al. INFECTION AND IMMUNITY
- CsrA Participates in a PNPase Autoregulatory Mechanism by Selectively Repressing Translation ofpnpTranscripts That Have Been Previously Processed by RNase III and PNPase
- (2015) Hongmarn Park et al. JOURNAL OF BACTERIOLOGY
- Regulation of Bacterial Virulence by Csr (Rsm) Systems
- (2015) Christopher A. Vakulskas et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Regulation of CsrB/C sRNA decay by EIIAGlcof the phosphoenolpyruvate: carbohydrate phosphotransferase system
- (2015) Yuanyuan Leng et al. MOLECULAR MICROBIOLOGY
- Salmonellae interactions with host processes
- (2015) Doris L. LaRock et al. NATURE REVIEWS MICROBIOLOGY
- Why weight? Modelling sample and observational level variability improves power in RNA-seq analyses
- (2015) Ruijie Liu et al. NUCLEIC ACIDS RESEARCH
- Salmonella Disrupts Host Endocytic Trafficking by SopD2-Mediated Inhibition of Rab7
- (2015) Vanessa M. D’Costa et al. Cell Reports
- A FRET-Based DNA Biosensor Tracks OmpR-Dependent Acidification of Salmonella during Macrophage Infection
- (2015) Smarajit Chakraborty et al. PLOS BIOLOGY
- World Health Organization Estimates of the Global and Regional Disease Burden of 22 Foodborne Bacterial, Protozoal, and Viral Diseases, 2010: A Data Synthesis
- (2015) Martyn D. Kirk et al. PLOS MEDICINE
- RNA-seq Brings New Insights to the Intra-Macrophage Transcriptome of Salmonella Typhimurium
- (2015) Shabarinath Srikumar et al. PLoS Pathogens
- Salmonella—how a metabolic generalist adopts an intracellular lifestyle during infection
- (2015) Thomas Dandekar et al. Frontiers in Cellular and Infection Microbiology
- Genomic Targets and Features of BarA-UvrY (-SirA) Signal Transduction Systems
- (2015) Tesfalem R. Zere et al. PLoS One
- Aetiology-Specific Estimates of the Global and Regional Incidence and Mortality of Diarrhoeal Diseases Commonly Transmitted through Food
- (2015) Sara M. Pires et al. PLoS One
- Bacterial Type III Secretion Systems: Specialized Nanomachines for Protein Delivery into Target Cells
- (2014) Jorge E. Galán et al. Annual Review of Microbiology
- HTSeq--a Python framework to work with high-throughput sequencing data
- (2014) S. Anders et al. BIOINFORMATICS
- Iron fortification adversely affects the gut microbiome, increases pathogen abundance and induces intestinal inflammation in Kenyan infants
- (2014) Tanja Jaeggi et al. GUT
- HilD Induces Expression of Salmonella Pathogenicity Island 2 Genes by Displacing the Global Negative Regulator H-NS from ssrAB
- (2014) L. C. Martinez et al. JOURNAL OF BACTERIOLOGY
- A sequence-based approach for prediction of CsrA/RsmA targets in bacteria with experimental validation in Pseudomonas aeruginosa
- (2014) P. R. Kulkarni et al. NUCLEIC ACIDS RESEARCH
- A Horizontally Acquired Transcription Factor Coordinates Salmonella Adaptations to Host Microenvironments
- (2014) N. F. Brown et al. mBio
- Fructose-Asparagine Is a Primary Nutrient during Growth of Salmonella in the Inflamed Intestine
- (2014) Mohamed M. Ali et al. PLoS Pathogens
- ProP Is Required for the Survival of Desiccated Salmonella enterica Serovar Typhimurium Cells on a Stainless Steel Surface
- (2013) S. Finn et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- An Infection-Relevant Transcriptomic Compendium for Salmonella enterica Serovar Typhimurium
- (2013) Carsten Kröger et al. Cell Host & Microbe
- Probiotic Bacteria Reduce Salmonella Typhimurium Intestinal Colonization by Competing for Iron
- (2013) Elisa Deriu et al. Cell Host & Microbe
- Salmonella enterica Serovar Typhimurium Skills To Succeed in the Host: Virulence and Regulation
- (2013) A. Fabrega et al. CLINICAL MICROBIOLOGY REVIEWS
- A novel CsrA titration mechanism regulates fimbrial gene expression in Salmonella typhimurium
- (2013) Torsten Sterzenbach et al. EMBO JOURNAL
- Dual function of the McaS small RNA in controlling biofilm formation
- (2013) M. G. Jorgensen et al. GENES & DEVELOPMENT
- Low-pH Rescue of Acid-Sensitive Salmonella enterica Serovar Typhi Strains by a Rhamnose-Regulated Arginine Decarboxylase System
- (2013) K. E. Brenneman et al. JOURNAL OF BACTERIOLOGY
- Burden and aetiology of diarrhoeal disease in infants and young children in developing countries (the Global Enteric Multicenter Study, GEMS): a prospective, case-control study
- (2013) Karen L Kotloff et al. LANCET
- CsrA activatesflhDCexpression by protectingflhDCmRNA from RNase E-mediated cleavage
- (2013) Alexander V. Yakhnin et al. MOLECULAR MICROBIOLOGY
- Selective ribosome profiling as a tool for studying the interaction of chaperones and targeting factors with nascent polypeptide chains and ribosomes
- (2013) Annemarie H Becker et al. Nature Protocols
- The Carbon Storage Regulator (Csr) System Exerts a Nutrient-Specific Control over Central Metabolism in Escherichia coli Strain Nissle 1917
- (2013) Olga Revelles et al. PLoS One
- Parallel Exploitation of Diverse Host Nutrients Enhances Salmonella Virulence
- (2013) Benjamin Steeb et al. PLoS Pathogens
- A serine sensor for multicellularity in a bacterium
- (2013) Arvind R Subramaniam et al. eLife
- Mechanisms of survival, responses and sources of Salmonella in low-moisture environments
- (2013) Sarah Finn et al. Frontiers in Microbiology
- Post-transcriptional regulation on a global scale: form and function of Csr/Rsm systems
- (2012) Tony Romeo et al. ENVIRONMENTAL MICROBIOLOGY
- Annual Cost of Illness and Quality-Adjusted Life Year Losses in the United States Due to 14 Foodborne Pathogens
- (2012) SANDRA HOFFMANN et al. JOURNAL OF FOOD PROTECTION
- Manipulation of the carbon storage regulator system for metabolite remodeling and biofuel production in Escherichia coli
- (2012) Adrienne E McKee et al. Microbial Cell Factories
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments
- (2012) Nicholas T Ingolia et al. Nature Protocols
- Nutritional immunity: transition metals at the pathogen–host interface
- (2012) M. Indriati Hood et al. NATURE REVIEWS MICROBIOLOGY
- Iron Availability Increases the Pathogenic Potential of Salmonella Typhimurium and Other Enteric Pathogens at the Intestinal Epithelial Interface
- (2012) Guus A. M. Kortman et al. PLoS One
- Phage-Mediated Acquisition of a Type III Secreted Effector Protein Boosts Growth of Salmonella by Nitrate Respiration
- (2012) C. A. Lopez et al. mBio
- Global mRNA decay analysis at single nucleotide resolution reveals segmental and positional degradation patterns in a Gram-positive bacterium
- (2012) Simen M Kristoffersen et al. GENOME BIOLOGY
- The Fur regulon in anaerobically grown Salmonella enterica sv. Typhimurium: identification of new Fur targets
- (2011) Bryan Troxell et al. BMC MICROBIOLOGY
- Salmonella effector proteins and host-cell responses
- (2011) C. V. Srikanth et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- Role ofSalmonellaPathogenicity Island 1 Protein IacP inSalmonella entericaSerovar Typhimurium Pathogenesis
- (2011) Jin Seok Kim et al. INFECTION AND IMMUNITY
- Salmonella spp. survival strategies within the host gastrointestinal tract
- (2011) A. Alvarez-Ordonez et al. MICROBIOLOGY-SGM
- Integration of a complex regulatory cascade involving the SirA/BarA and Csr global regulatory systems that controls expression of the Salmonella SPI-1 and SPI-2 virulence regulons through HilD
- (2011) Luary C. Martínez et al. MOLECULAR MICROBIOLOGY
- Circuitry linking the Csr and stringent response global regulatory systems
- (2011) Adrianne N. Edwards et al. MOLECULAR MICROBIOLOGY
- REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms
- (2011) Fran Supek et al. PLoS One
- Intestinal inflammation allows Salmonella to use ethanolamine to compete with the microbiota
- (2011) P. Thiennimitr et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Role of the spv Genes in Salmonella Pathogenesis
- (2011) Donald G. Guiney et al. Frontiers in Microbiology
- The Escherichia coli btuE gene, encodes a glutathione peroxidase that is induced under oxidative stress conditions
- (2010) Felipe A. Arenas et al. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
- The multifaceted capacity of Dps proteins to combat bacterial stress conditions: Detoxification of iron and hydrogen peroxide and DNA binding
- (2010) Emilia Chiancone et al. BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS
- Discovery of Novel Secreted Virulence Factors fromSalmonella entericaSerovar Typhimurium by Proteomic Analysis of Culture Supernatants
- (2010) George S. Niemann et al. INFECTION AND IMMUNITY
- The Physiological Stimulus for the BarA Sensor Kinase
- (2010) R. Gonzalez Chavez et al. JOURNAL OF BACTERIOLOGY
- Cationic Amino Acid Transporters and Salmonella Typhimurium ArgT Collectively Regulate Arginine Availability towards Intracellular Salmonella Growth
- (2010) Priyanka Das et al. PLoS One
- pH Sensing by Intracellular Salmonella Induces Effector Translocation
- (2010) X. J. Yu et al. SCIENCE
- Control of Salmonella pathogenicity island-2 gene expression
- (2009) Ephraim Fass et al. CURRENT OPINION IN MICROBIOLOGY
- Complex regulatory network encompassing the Csr, c-di-GMP and motility systems ofSalmonellaTyphimurium
- (2009) Kristina Jonas et al. ENVIRONMENTAL MICROBIOLOGY
- TheEscherichia coliCsrB and CsrC small RNAs are strongly induced during growth in nutrient-poor medium
- (2009) Kristina Jonas et al. FEMS MICROBIOLOGY LETTERS
- Systematic Analysis of the SsrAB Virulon of Salmonella enterica
- (2009) X. Xu et al. INFECTION AND IMMUNITY
- Redundant Hydrogen Peroxide Scavengers Contribute to Salmonella Virulence and Oxidative Stress Resistance
- (2009) M. Hebrard et al. JOURNAL OF BACTERIOLOGY
- Molecular Geometry of CsrA (RsmA) Binding to RNA and Its Implications for Regulated Expression
- (2009) Jeffrey Mercante et al. JOURNAL OF MOLECULAR BIOLOGY
- Coordinated Regulation of Virulence during Systemic Infection of Salmonella enterica Serovar Typhimurium
- (2009) Hyunjin Yoon et al. PLoS Pathogens
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- The Salmonella-containing vacuole—Moving with the times
- (2008) Olivia Steele-Mortimer CURRENT OPINION IN MICROBIOLOGY
- Glutathione transferases in bacteria
- (2008) Nerino Allocati et al. FEBS Journal
- Formate Acts as a Diffusible Signal To Induce Salmonella Invasion
- (2008) Y. Huang et al. JOURNAL OF BACTERIOLOGY
- Overcoming H-NS-mediated Transcriptional Silencing of Horizontally Acquired Genes by the PhoP and SlyA Proteins inSalmonella enterica
- (2008) J. Christian Perez et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- High-throughput functional annotation and data mining with the Blast2GO suite
- (2008) S. Gotz et al. NUCLEIC ACIDS RESEARCH
- A dual-signal regulatory circuit activates transcription of a set of divergent operons in Salmonella typhimurium
- (2008) G. Zhao et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- HilD-mediated transcriptional cross-talk between SPI-1 and SPI-2
- (2008) V. H. Bustamante et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Salmonellae interplay with host cells
- (2007) Andrea Haraga et al. NATURE REVIEWS MICROBIOLOGY
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