标题
Toward a systems-level view of dynamic phosphorylation networks
作者
关键词
-
出版物
Frontiers in Genetics
Volume 5, Issue -, Pages -
出版商
Frontiers Media SA
发表日期
2014-08-15
DOI
10.3389/fgene.2014.00263
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Luminol-Based Chemiluminescent Signals: Clinical and Non-clinical Application and Future Uses
- (2014) Parvez Khan et al. APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY
- Integration, visualization and analysis of human interactome
- (2014) Chiara Pastrello et al. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
- ERKs in Cancer: Friends or Foes?
- (2014) Xavier Deschênes-Simard et al. CANCER RESEARCH
- Mammalian Target of Rapamycin Signaling in Cardiac Physiology and Disease
- (2014) Sebastiano Sciarretta et al. CIRCULATION RESEARCH
- Recent advances in enrichment and separation strategies for mass spectrometry-based phosphoproteomics
- (2014) Chenxi Yang et al. ELECTROPHORESIS
- Proteomic analysis of phosphorylation in cancer
- (2014) Benjamin Ruprecht et al. Expert Review of Proteomics
- Protein phosphatases in pancreatic islets
- (2014) Henrik Ortsäter et al. JOURNAL OF ENDOCRINOLOGY
- Software eyes for protein post-translational modifications
- (2014) Seungjin Na et al. MASS SPECTROMETRY REVIEWS
- Ischemia in Tumors Induces Early and Sustained Phosphorylation Changes in Stress Kinase Pathways but Does Not Affect Global Protein Levels
- (2014) Philipp Mertins et al. MOLECULAR & CELLULAR PROTEOMICS
- Engineering and characterizing monomeric fluorescent proteins for live-cell imaging applications
- (2014) Hui-wang Ai et al. Nature Protocols
- Constraint-based models predict metabolic and associated cellular functions
- (2014) Aarash Bordbar et al. NATURE REVIEWS GENETICS
- Application of molecular technologies for phosphoproteomic analysis of clinical samples
- (2014) M Pierobon et al. ONCOGENE
- Sizing up models of heart failure: Proteomics from flies to humans
- (2014) Viola Kooij et al. Proteomics Clinical Applications
- Phosphoregulation of Nap1 Plays a Role in Septin Ring Dynamics and Morphogenesis in Candida albicans
- (2014) Z.-X. Huang et al. mBio
- Akt/PKB activation and insulin signaling: a novel insulin signaling pathway in the treatment of type 2 diabetes
- (2014) Richard Mackenzie et al. Diabetes Metabolic Syndrome and Obesity-Targets and Therapy
- Structure-Guided Inhibitor Design Expands the Scope of Analog-Sensitive Kinase Technology
- (2013) Chao Zhang et al. ACS Chemical Biology
- AGC protein kinases: From structural mechanism of regulation to allosteric drug development for the treatment of human diseases
- (2013) José M. Arencibia et al. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS
- Global analysis of phosphorylation networks in humans
- (2013) Jianfei Hu et al. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS
- Evaluation of reverse phase protein array (RPPA)-based pathway-activation profiling in 84 non-small cell lung cancer (NSCLC) cell lines as platform for cancer proteomics and biomarker discovery
- (2013) Ramesh Ummanni et al. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS
- Regulation of connexin- and pannexin-based channels by post-translational modifications
- (2013) Catheleyne D'hondt et al. BIOLOGY OF THE CELL
- Network-Based Approaches in Drug Discovery and Early Development
- (2013) J M Harrold et al. CLINICAL PHARMACOLOGY & THERAPEUTICS
- Zooming in on biological processes with fluorescence nanoscopy
- (2013) Utsav Agrawal et al. CURRENT OPINION IN BIOTECHNOLOGY
- Single molecule methods with applications in living cells
- (2013) Fredrik Persson et al. CURRENT OPINION IN BIOTECHNOLOGY
- Förster resonance energy transfer microscopy and spectroscopy for localizing protein-protein interactions in living cells
- (2013) Yuansheng Sun et al. CYTOMETRY PART A
- Reporter-based screening and selection of enzymes
- (2013) Teunke van Rossum et al. FEBS Journal
- cAMP-dependent Protein Kinase and c-Jun N-terminal Kinase Mediate Stathmin Phosphorylation for the Maintenance of Interphase Microtubules during Osmotic Stress
- (2013) Yan Y. Yip et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Visualizing and Manipulating Focal Adhesion Kinase Regulation in Live Cells
- (2013) Michael Ritt et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Bioluminescence imaging: a shining future for cardiac regeneration
- (2013) Santiago Roura et al. JOURNAL OF CELLULAR AND MOLECULAR MEDICINE
- A Phos-tag-based magnetic-bead method for rapid and selective separation of phosphorylated biomolecules
- (2013) Masaya Tsunehiro et al. JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES
- Insulin signaling, resistance, and metabolic syndrome: insights from mouse models into disease mechanisms
- (2013) Shaodong Guo JOURNAL OF ENDOCRINOLOGY
- Mapping and analysis of phosphorylation sites: a quick guide for cell biologists
- (2013) Noah Dephoure et al. MOLECULAR BIOLOGY OF THE CELL
- Optimization of a genetically encoded biosensor for cyclin B1-cyclin dependent kinase 1
- (2013) Ahmed Saied F. Belal et al. Molecular BioSystems
- Construction of human activity-based phosphorylation networks
- (2013) R. H. Newman et al. Molecular Systems Biology
- Phospho-Ser/Thr-binding domains: navigating the cell cycle and DNA damage response
- (2013) H. Christian Reinhardt et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Chemical approaches to study metabolic networks
- (2013) Daniel Medina-Cleghorn et al. PFLUGERS ARCHIV-EUROPEAN JOURNAL OF PHYSIOLOGY
- Simultaneous Quantitative Live Cell Imaging of Multiple FRET-Based Biosensors
- (2013) Andrew Woehler PLoS One
- Profiling the Dynamics of a Human Phosphorylome Reveals New Components in HGF/c-Met Signaling
- (2013) Crystal L. Woodard et al. PLoS One
- Deciphering the Structural Basis of Eukaryotic Protein Kinase Regulation
- (2013) Hiruy S. Meharena et al. PLOS BIOLOGY
- DE NOVO SEQUENCING WITH LIMITED NUMBER OF POST-TRANSLATIONAL MODIFICATIONS PER PEPTIDE
- (2013) LIN HE et al. Journal of Bioinformatics and Computational Biology
- The expanding field of SILAC
- (2012) Shao-En Ong ANALYTICAL AND BIOANALYTICAL CHEMISTRY
- An insight into iTRAQ: where do we stand now?
- (2012) Caroline Evans et al. ANALYTICAL AND BIOANALYTICAL CHEMISTRY
- Novel Mass Spectrometric Method for Phosphorylation Quantification Using Cerium Oxide Nanoparticles and Tandem Mass Tags
- (2012) Weitao Jia et al. ANALYTICAL CHEMISTRY
- Fluorescence resonance energy transfer (FRET)-based biosensors: visualizing cellular dynamics and bioenergetics
- (2012) Sohila Zadran et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Posttranslational modifications of cardiac ryanodine receptors: Ca2+ signaling and EC-coupling
- (2012) Ernst Niggli et al. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH
- FRET microscopy in the living cell: Different approaches, strengths and weaknesses
- (2012) Sergi Padilla-Parra et al. BIOESSAYS
- Fluorescent proteins for FRET microscopy: Monitoring protein interactions in living cells
- (2012) Richard N. Day et al. BIOESSAYS
- Rapid Determination of Multiple Linear Kinase Substrate Motifs by Mass Spectrometry
- (2012) Arminja N. Kettenbach et al. CHEMISTRY & BIOLOGY
- Separation and identification of four distinct serine-phosphorylation states of ovalbumin by Phos-tag affinity electrophoresis
- (2012) Emiko Kinoshita-Kikuta et al. ELECTROPHORESIS
- STED microscopy detects and quantifies liquid phase separation in lipid membranes using a new far-red emitting fluorescent phosphoglycerolipid analogue
- (2012) Alf Honigmann et al. FARADAY DISCUSSIONS
- Diversity in Genetic In Vivo Methods for Protein-Protein Interaction Studies: from the Yeast Two-Hybrid System to the Mammalian Split-Luciferase System
- (2012) B. Stynen et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Systematic Analysis of Protein Phosphorylation Networks From Phosphoproteomic Data
- (2012) Chunxia Song et al. MOLECULAR & CELLULAR PROTEOMICS
- Rapid Identification of Monospecific Monoclonal Antibodies Using a Human Proteome Microarray
- (2012) Jun Seop Jeong et al. MOLECULAR & CELLULAR PROTEOMICS
- Improving FRET dynamic range with bright green and red fluorescent proteins
- (2012) Amy J Lam et al. NATURE METHODS
- Modular evolution of phosphorylation-based signalling systems
- (2012) J. Jin et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Why nature chose phosphate to modify proteins
- (2012) T. Hunter PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Differential Proteomic Analysis of Human Erythroblasts Undergoing Apoptosis Induced by Epo-Withdrawal
- (2012) Stéphanie Pellegrin et al. PLoS One
- Phosphoproteome of Human Glioblastoma Initiating Cells Reveals Novel Signaling Regulators Encoded by the Transcriptome
- (2012) Hiroko Kozuka-Hata et al. PLoS One
- Mathematical Modelling of the MAP Kinase Pathway Using Proteomic Datasets
- (2012) Tianhai Tian et al. PLoS One
- Using Bacteria to Determine Protein Kinase Specificity and Predict Target Substrates
- (2012) Michael F. Chou et al. PLoS One
- Widely accessible method for superresolution fluorescence imaging of living systems
- (2012) P. Dedecker et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Highly sensitive detection of protein phosphorylation by using improved Phos-tag Biotin
- (2012) Eiji Kinoshita et al. PROTEOMICS
- Functional protein microarray as molecular decathlete: A versatile player in clinical proteomics
- (2012) Heng Zhu et al. Proteomics Clinical Applications
- Toward quantitative phosphotyrosine profiling in vivo
- (2012) Hannah Johnson et al. SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY
- Quantitative phosphoproteomics to characterize signaling networks
- (2012) Kristoffer T.G. Rigbolt et al. SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY
- Imaging Translation in Single Cells Using Fluorescent Microscopy
- (2012) J. A. Chao et al. Cold Spring Harbor Perspectives in Biology
- A novel whole-cell lysate kinase assay identifies substrates of the p38 MAPK in differentiating myoblasts
- (2012) James DR Knight et al. Skeletal Muscle
- Advances in Quantitative Phosphoproteomics
- (2011) Carol L. Nilsson ANALYTICAL CHEMISTRY
- Reporting from the Field: Genetically Encoded Fluorescent Reporters Uncover Signaling Dynamics in Living Biological Systems
- (2011) Sohum Mehta et al. Annual Review of Biochemistry
- A Fluorescent Reporter of AMPK Activity and Cellular Energy Stress
- (2011) Peiling Tsou et al. Cell Metabolism
- Genetically Encodable Fluorescent Biosensors for Tracking Signaling Dynamics in Living Cells
- (2011) Robert H. Newman et al. CHEMICAL REVIEWS
- Fluorescence Resonance Energy Transfer–Based Sensor Camui Provides New Insight Into Mechanisms of Calcium/Calmodulin-Dependent Protein Kinase II Activation in Intact Cardiomyocytes
- (2011) Jeffrey R. Erickson et al. CIRCULATION RESEARCH
- Protein phosphorylation from the perspective of systems biology
- (2011) Abderahmane Derouiche et al. CURRENT OPINION IN BIOTECHNOLOGY
- Split-protein systems: beyond binary protein–protein interactions
- (2011) Sujan S Shekhawat et al. CURRENT OPINION IN CHEMICAL BIOLOGY
- Dissecting phosphorylation networks: lessons learned from yeast
- (2011) Janine Mok et al. Expert Review of Proteomics
- Quantitative phosphoproteomics strategies for understanding protein kinase-mediated signal transduction pathways
- (2011) Hidetaka Kosako et al. Expert Review of Proteomics
- High-resolution imaging of the immunological synapse and T-cell receptor microclustering through microfabricated substrates
- (2011) M. J. P. Biggs et al. Journal of the Royal Society Interface
- Development of an optimized backbone of FRET biosensors for kinases and GTPases
- (2011) Naoki Komatsu et al. MOLECULAR BIOLOGY OF THE CELL
- Phos-Tag-Based Analysis of Myosin Regulatory Light Chain Phosphorylation in Human Uterine Myocytes
- (2011) Hector N. Aguilar et al. PLoS One
- PI3K/Akt signaling requires spatial compartmentalization in plasma membrane microdomains
- (2011) X. Gao et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Phos-tag SDS-PAGE systems for phosphorylation profiling of proteins with a wide range of molecular masses under neutral pH conditions
- (2011) Eiji Kinoshita et al. PROTEOMICS
- Molecular basis for specificity of nuclear import and prediction of nuclear localization
- (2010) Mary Marfori et al. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH
- Strategies for the identification of kinase substrates using analog-sensitive kinases
- (2010) André Koch et al. EUROPEAN JOURNAL OF CELL BIOLOGY
- Confident Phosphorylation Site Localization Using the Mascot Delta Score
- (2010) Mikhail M. Savitski et al. MOLECULAR & CELLULAR PROTEOMICS
- Signaling diversity of PKA achieved via a Ca2+-cAMP-PKA oscillatory circuit
- (2010) Qiang Ni et al. Nature Chemical Biology
- Decoding signalling networks by mass spectrometry-based proteomics
- (2010) Chunaram Choudhary et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- A Global Protein Kinase and Phosphatase Interaction Network in Yeast
- (2010) A. Breitkreutz et al. SCIENCE
- Deciphering Protein Kinase Specificity Through Large-Scale Analysis of Yeast Phosphorylation Site Motifs
- (2010) J. Mok et al. Science Signaling
- Phosphoproteomic Analysis Reveals Interconnected System-Wide Responses to Perturbations of Kinases and Phosphatases in Yeast
- (2010) B. Bodenmiller et al. Science Signaling
- Quantitative Phosphoproteomics Reveals Widespread Full Phosphorylation Site Occupancy During Mitosis
- (2010) J. V. Olsen et al. Science Signaling
- Protein kinases: evolution of dynamic regulatory proteins
- (2010) Susan S. Taylor et al. TRENDS IN BIOCHEMICAL SCIENCES
- Functional protein microarray technology
- (2010) Shaohui Hu et al. Wiley Interdisciplinary Reviews-Systems Biology and Medicine
- Profiling the Human Protein-DNA Interactome Reveals ERK2 as a Transcriptional Repressor of Interferon Signaling
- (2009) Shaohui Hu et al. CELL
- FRET-Based Activity Biosensors to Probe Compartmentalized Signaling
- (2009) Xinxin Gao et al. CHEMBIOCHEM
- The structure and function of fluorescent proteins
- (2009) Vedangi Sample et al. CHEMICAL SOCIETY REVIEWS
- Genetically encoded biosensors based on engineered fluorescent proteins
- (2009) Wolf B. Frommer et al. CHEMICAL SOCIETY REVIEWS
- The fluorescent protein palette: tools for cellular imaging
- (2009) Richard N. Day et al. CHEMICAL SOCIETY REVIEWS
- Genetically encoded FRET-based biosensors for multiparameter fluorescence imaging
- (2009) Haley J Carlson et al. CURRENT OPINION IN BIOTECHNOLOGY
- Hares and tortoises: The high- versus low-throughput proteomic race
- (2009) Marc R. Wilkins ELECTROPHORESIS
- Two-dimensional phosphate-affinity gel electrophoresis for the analysis of phosphoprotein isotypes
- (2009) Eiji Kinoshita et al. ELECTROPHORESIS
- Detection of phosphorylated T and B cell antigen receptor species by Phos-tag SDS- and Blue Native-PAGE
- (2009) Sumit Deswal et al. IMMUNOLOGY LETTERS
- Dynamic visualization of signal transduction in living cells: From second messengers to kinases
- (2009) Katie J. Herbst et al. IUBMB LIFE
- Global identification of protein kinase substrates by protein microarray analysis
- (2009) Janine Mok et al. Nature Protocols
- A Dynamic Analysis of IRS-PKR Signaling in Liver Cells: A Discrete Modeling Approach
- (2009) Ming Wu et al. PLoS One
- Improved method of phosphopeptides enrichment using biphasic phosphate-binding tag/C18 tip for versatile analysis of phosphorylation dynamics
- (2009) Takuji Nabetani et al. PROTEOMICS
- Multiplexed FRET to Image Multiple Signaling Events in Live Cells
- (2008) David M. Grant et al. BIOPHYSICAL JOURNAL
- Cell Shape and Negative Links in Regulatory Motifs Together Control Spatial Information Flow in Signaling Networks
- (2008) Susana R. Neves et al. CELL
- Fluorescence-based methods in the study of protein–protein interactions in living cells
- (2008) Francisco Ciruela CURRENT OPINION IN BIOTECHNOLOGY
- MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays
- (2008) S. C. Popescu et al. GENES & DEVELOPMENT
- Differential Integration of Ca2+-Calmodulin Signal in Intact Ventricular Myocytes at Low and High Affinity Ca2+-Calmodulin Targets
- (2008) Qiujing Song et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Global Analysis of Gel Mobility of Proteins and Its Use in Target Identification
- (2008) Atsuko Shirai et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Quantitative reverse transcriptase real-time polymerase chain reaction (qRT-PCR) in translational oncology: Lung cancer perspective
- (2008) Marcin Skrzypski LUNG CANCER
- Temporal Perturbation of Tyrosine Phosphoproteome Dynamics Reveals the System-wide Regulatory Networks
- (2008) Masaaki Oyama et al. MOLECULAR & CELLULAR PROTEOMICS
- Visualization of phosphatase activity in living cells with a FRET-based calcineurin activity sensor
- (2008) Robert H. Newman et al. Molecular BioSystems
- Fluorescent protein FRET pairs for ratiometric imaging of dual biosensors
- (2008) Hui-wang Ai et al. NATURE METHODS
- Comparisons of tyrosine phosphorylated proteins in cells expressing lung cancer-specific alleles of EGFR and KRAS
- (2008) U. Guha et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Identification of phosphotyrosyl proteins in vitreous humours of patients with vitreoretinal diseases by sodium dodecyl sulphate-polyacrylamide gel electrophoresis/Western blotting/matrix-assisted laser desorption time-of-flight mass spectrometry
- (2008) N. Mukai et al. ANNALS OF CLINICAL BIOCHEMISTRY
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