Systematic Analysis of Protein Phosphorylation Networks From Phosphoproteomic Data

GPS-YNO2: computational prediction of tyrosine nitration sites in proteins

(2011) Zexian Liu et al.   Molecular BioSystems

Classification Filtering Strategy to Improve the Coverage and Sensitivity of Phosphoproteome Analysis

(2010) Xinning Jiang et al.   ANALYTICAL CHEMISTRY

A Fully Automated System with Online Sample Loading, Isotope Dimethyl Labeling and Multidimensional Separation for High-Throughput Quantitative Proteome Analysis

(2010) Fangjun Wang et al.   ANALYTICAL CHEMISTRY

A Summary of Computational Resources for Protein Phosphorylation

(2010) Yu Xue et al.   CURRENT PROTEIN & PEPTIDE SCIENCE

Chinese Human Liver Proteome Project: A Pathfinder of HUPO Human Liver Proteome Project

(2010) Fuchu He et al.   JOURNAL OF PROTEOME RESEARCH

ArMone: A Software Suite Specially Designed for Processing and Analysis of Phosphoproteome Data

(2010) Xinning Jiang et al.   JOURNAL OF PROTEOME RESEARCH

Reversed-Phase-Reversed-Phase Liquid Chromatography Approach with High Orthogonality for Multidimensional Separation of Phosphopeptides

(2009) Chunxia Song et al.   ANALYTICAL CHEMISTRY

Liverbase: A Comprehensive View of Human Liver Biology

(2009) Aihua Sun et al.   JOURNAL OF PROTEOME RESEARCH

SysPTM: A Systematic Resource for Proteomic Research on Post-translational Modifications

(2009) Hong Li et al.   MOLECULAR & CELLULAR PROTEOMICS

Phosphorylation of the Transcription Elongation Factor Spt5 by Yeast Bur1 Kinase Stimulates Recruitment of the PAF Complex

(2009) Y. Liu et al.   MOLECULAR AND CELLULAR BIOLOGY

Kinase mutations in human disease: interpreting genotype–phenotype relationships

(2009) Piya Lahiry et al.   NATURE REVIEWS GENETICS

Control of transcriptional elongation and cotranscriptional histone modification by the yeast BUR kinase substrate Spt5

(2009) K. Zhou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Experimental and computational tools useful for (re)construction of dynamic kinase–substrate networks

(2009) Chris Soon Heng Tan et al.   PROTEOMICS

Comparative Analysis Reveals Conserved Protein Phosphorylation Networks Implicated in Multiple Diseases

(2009) C. S. H. Tan et al.   Science Signaling

Proteome-wide prediction of PKA phosphorylation sites in eukaryotic kingdom

(2008) Xinjiao Gao et al.   GENOMICS

GPS 2.0, a Tool to Predict Kinase-specific Phosphorylation Sites in Hierarchy

(2008) Yu Xue et al.   MOLECULAR & CELLULAR PROTEOMICS

PhosphoPep—a database of protein phosphorylation sites in model organisms

(2008) Bernd Bodenmiller et al.   NATURE BIOTECHNOLOGY

Human Protein Reference Database--2009 update

(2008) T. S. Keshava Prasad et al.   NUCLEIC ACIDS RESEARCH

Large-scale phosphoproteome analysis of human liver tissue by enrichment and fractionation of phosphopeptides with strong anion exchange chromatography

(2008) Guanghui Han et al.   PROTEOMICS

Comparative phosphoproteomics reveals evolutionary and functional conservation of phosphorylation across eukaryotes

(2008) Jos Boekhorst et al.   GENOME BIOLOGY