Phylogenetic Analysis of a Spontaneous Cocoa Bean Fermentation Metagenome Reveals New Insights into Its Bacterial and Fungal Community Diversity
出版年份 2012 全文链接
标题
Phylogenetic Analysis of a Spontaneous Cocoa Bean Fermentation Metagenome Reveals New Insights into Its Bacterial and Fungal Community Diversity
作者
关键词
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出版物
PLoS One
Volume 7, Issue 5, Pages e38040
出版商
Public Library of Science (PLoS)
发表日期
2012-05-30
DOI
10.1371/journal.pone.0038040
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Interesting Starter Culture Strains for Controlled Cocoa Bean Fermentation Revealed by Simulated Cocoa Pulp Fermentations of Cocoa-Specific Lactic Acid Bacteria
- (2011) Timothy Lefeber et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Species Diversity, Community Dynamics, and Metabolite Kinetics of the Microbiota Associated with Traditional Ecuadorian Spontaneous Cocoa Bean Fermentations
- (2011) Zoi Papalexandratou et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Metagenomic Analysis of Kimchi, a Traditional Korean Fermented Food
- (2011) Ji Young Jung et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- RAIphy: Phylogenetic classification of metagenomics samples using iterative refinement of relative abundance index profiles
- (2011) Ozkan U Nalbantoglu et al. BMC BIOINFORMATICS
- Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences
- (2011) Bo Liu et al. BMC GENOMICS
- Theobroma cacaoL., “The Food of the Gods”: Quality Determinants of Commercial Cocoa Beans, with Particular Reference to the Impact of Fermentation
- (2011) Lídia J. R. Lima et al. CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION
- High-throughput sequence-based analysis of the bacterial composition of kefir and an associated kefir grain
- (2011) Alleson Dobson et al. FEMS MICROBIOLOGY LETTERS
- Assessment of the yeast species composition of cocoa bean fermentations in different cocoa-producing regions using denaturing gradient gel electrophoresis
- (2011) Zoi Papalexandratou et al. FEMS YEAST RESEARCH
- Comparison of the bacterial species diversity of spontaneous cocoa bean fermentations carried out at selected farms in Ivory Coast and Brazil
- (2011) Zoi Papalexandratou et al. FOOD MICROBIOLOGY
- Spontaneous organic cocoa bean box fermentations in Brazil are characterized by a restricted species diversity of lactic acid bacteria and acetic acid bacteria
- (2011) Zoi Papalexandratou et al. FOOD MICROBIOLOGY
- On-farm implementation of a starter culture for improved cocoa bean fermentation and its influence on the flavour of chocolates produced thereof
- (2011) Timothy Lefeber et al. FOOD MICROBIOLOGY
- Bacteriophages of lactic acid bacteria and their impact on milk fermentations
- (2011) Josiane E Garneau et al. Microbial Cell Factories
- Taxonomic classification of metagenomic shotgun sequences with CARMA3
- (2011) Wolfgang Gerlach et al. NUCLEIC ACIDS RESEARCH
- Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing
- (2011) Sebastian Jaenicke et al. PLoS One
- Metagenomic Analysis of the Viral Communities in Fermented Foods
- (2010) Eun-Jin Park et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Diversity of the total bacterial community associated with Ghanaian and Brazilian cocoa bean fermentation samples as revealed by a 16 S rRNA gene clone library
- (2010) Tamara Garcia-Armisen et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- SmashCommunity: a metagenomic annotation and analysis tool: Fig. 1.
- (2010) Manimozhiyan Arumugam et al. BIOINFORMATICS
- Clustering metagenomic sequences with interpolated Markov models
- (2010) David R Kelley et al. BMC BIOINFORMATICS
- Dynamics and species diversity of communities of lactic acid bacteria and acetic acid bacteria during spontaneous cocoa bean fermentation in vessels
- (2010) Timothy Lefeber et al. FOOD MICROBIOLOGY
- An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology
- (2010) R. Henrik Nilsson et al. Fungal Ecology
- 16S rRNA pyrosequencing-based investigation of the bacterial community in nukadoko, a pickling bed of fermented rice bran
- (2010) Naoshige Sakamoto et al. INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY
- Viruses in the faecal microbiota of monozygotic twins and their mothers
- (2010) Alejandro Reyes et al. NATURE
- Achievements and new knowledge unraveled by metagenomic approaches
- (2009) Carola Simon et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data
- (2009) M. Morgan et al. BIOINFORMATICS
- TACOA – Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach
- (2009) Naryttza N Diaz et al. BMC BIOINFORMATICS
- Methods for comparative metagenomics
- (2009) Daniel H Huson et al. BMC BIOINFORMATICS
- Yeast diversity of Ghanaian cocoa bean heap fermentations
- (2009) Heide-Marie Daniel et al. FEMS YEAST RESEARCH
- Bacteriophages of Lactobacillus
- (2009) Manuela Villion Frontiers in Bioscience-Landmark
- Bacteriophage predation regulates microbial abundance and diversity in a full-scale bioreactor treating industrial wastewater
- (2009) Orr H Shapiro et al. ISME Journal
- Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models
- (2009) Arthur Brady et al. NATURE METHODS
- The Pfam protein families database
- (2009) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- New dimensions of the virus world discovered through metagenomics
- (2009) David M. Kristensen et al. TRENDS IN MICROBIOLOGY
- Flavor Formation and Character in Cocoa and Chocolate: A Critical Review
- (2008) Emmanuel Ohene Afoakwa et al. CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION
- Diversity of Predominant Lactic Acid Bacteria Associated with Cocoa Fermentation in Nigeria
- (2008) Melanie Kostinek et al. CURRENT MICROBIOLOGY
- New tools for discovering and characterizing microbial diversity
- (2008) Erick Cardenas et al. CURRENT OPINION IN BIOTECHNOLOGY
- The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology
- (2008) Andreas Schlüter et al. JOURNAL OF BIOTECHNOLOGY
- A Bioinformatician's Guide to Metagenomics
- (2008) V. Kunin et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Phylogenetic classification of short environmental DNA fragments
- (2008) Lutz Krause et al. NUCLEIC ACIDS RESEARCH
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