Conserved Temporal Patterns of MicroRNA Expression in Drosophila Support a Developmental Hourglass Model

Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis

(2014) M. Ninova et al.   RNA

Conservation of mRNA and Protein Expression during Development of C. elegans

(2014) Dominic Grün et al.   Cell Reports

Drosophila Embryogenesis Scales Uniformly across Temperature in Developmentally Diverse Species

(2014) Steven G. Kuntz et al.   PLoS Genetics

Evolution of mir-92a Underlies Natural Morphological Variation in Drosophila melanogaster

(2013) Saad Arif et al.   CURRENT BIOLOGY

The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan

(2013) Zhuo Wang et al.   NATURE GENETICS

Clusters of microRNAs emerge by new hairpins in existing transcripts

(2013) Antonio Marco et al.   NUCLEIC ACIDS RESEARCH

The Hourglass and the Early Conservation Models—Co-Existing Patterns of Developmental Constraints in Vertebrates

(2013) Barbara Piasecka et al.   PLoS Genetics

A transcriptomic hourglass in plant embryogenesis

(2012) Marcel Quint et al.   NATURE

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

The evolution of early animal embryos: conservation or divergence?

(2012) Alex T. Kalinka et al.   TRENDS IN ECOLOGY & EVOLUTION

Evidence for post-transcriptional regulation of clustered microRNAs in Drosophila

(2011) Sergei S Ryazansky et al.   BMC GENOMICS

Global quantification of mammalian gene expression control

(2011) Björn Schwanhäusser et al.   NATURE

Evolution of microRNA diversity and regulation in animals

(2011) Eugene Berezikov   NATURE REVIEWS GENETICS

Analysis of microRNA turnover in mammalian cells following Dicer1 ablation

(2011) Michael P. Gantier et al.   NUCLEIC ACIDS RESEARCH

Comparative transcriptome analysis reveals vertebrate phylotypic period during organogenesis

(2011) Naoki Irie et al.   Nature Communications

Lessons from microRNA mutants in worms, flies and mice

(2010) Peter Smibert et al.   CELL CYCLE

Gene expression divergence recapitulates the developmental hourglass model

(2010) Alex T. Kalinka et al.   NATURE

Ancient animal microRNAs and the evolution of tissue identity

(2010) Foteini Christodoulou et al.   NATURE

A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns

(2010) Tomislav Domazet-Lošo et al.   NATURE

NCBI GEO: archive for functional genomics data sets--10 years on

(2010) T. Barrett et al.   NUCLEIC ACIDS RESEARCH

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata

(2010) O. Rota-Stabelli et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genome-wide analysis of mRNA decay patterns during early Drosophila development

(2010) Stefan Thomsen et al.   GENOME BIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

The deep evolution of metazoan microRNAs

(2009) Benjamin M. Wheeler et al.   EVOLUTION & DEVELOPMENT

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Endogenous RNA Interference Provides a Somatic Defense against Drosophila Transposons

(2008) Wei-Jen Chung et al.   CURRENT BIOLOGY

Microevolutionary support for a developmental hourglass: gene expression patterns shape sequence variation and divergence inDrosophila

(2008) Tami Cruickshank et al.   EVOLUTION & DEVELOPMENT

Developmental Constraints on Vertebrate Genome Evolution

(2008) Julien Roux et al.   PLoS Genetics