NCBI GEO: archive for functional genomics data sets--10 years on

Reducing the algorithmic variability in transcriptome-based inference

(2010) Salih Tuna et al.   BIOINFORMATICS

An 8-gene qRT-PCR-based gene expression score that has prognostic value in early breast cancer

(2010) Iker Sánchez-Navarro et al.   BMC CANCER

Predicting environmental chemical factors associated with disease-related gene expression data

(2010) Chirag J Patel et al.   BMC Medical Genomics

MARQ: an online tool to mine GEO for experiments with similar or opposite gene expression signatures

(2010) Miguel Vazquez et al.   NUCLEIC ACIDS RESEARCH

NCBI Epigenomics: a new public resource for exploring epigenomic data sets

(2010) I. M. Fingerman et al.   NUCLEIC ACIDS RESEARCH

Gene Expression Prediction by Soft Integration and the Elastic Net—Best Performance of the DREAM3 Gene Expression Challenge

(2010) Mika Gustafsson et al.   PLoS One

Gene Expression-Based Classification of Non-Small Cell Lung Carcinomas and Survival Prediction

(2010) Jun Hou et al.   PLoS One

Bayesian approach to transforming public gene expression repositories into disease diagnosis databases

(2010) H. Huang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets

(2010) Silpa Suthram et al.   PLoS Computational Biology

GEOGLE: context mining tool for the correlation between gene expression and the phenotypic distinction

(2009) Yao Yu et al.   BMC BIOINFORMATICS

Simultaneous analysis of distinct Omics data sets with integration of biological knowledge: Multiple Factor Analysis approach.

(2009) Marie de Tayrac et al.   BMC GENOMICS

Archiving next generation sequencing data

(2009) Martin Shumway et al.   NUCLEIC ACIDS RESEARCH

Database resources of the National Center for Biotechnology Information

(2008) E. W. Sayers et al.   NUCLEIC ACIDS RESEARCH

ArrayExpress update--from an archive of functional genomics experiments to the atlas of gene expression

(2008) H. Parkinson et al.   NUCLEIC ACIDS RESEARCH

NCBI GEO: archive for high-throughput functional genomic data

(2008) T. Barrett et al.   NUCLEIC ACIDS RESEARCH

TranscriptomeBrowser: A Powerful and Flexible Toolbox to Explore Productively the Transcriptional Landscape of the Gene Expression Omnibus Database

(2008) Fabrice Lopez et al.   PLoS One