The Transcriptome of Nacobbus aberrans Reveals Insights into the Evolution of Sedentary Endoparasitism in Plant-Parasitic Nematodes

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode

(2014) James A Cotton et al.   GENOME BIOLOGY

Optimizing de novo assembly of short-read RNA-seq data for phylogenomics

(2013) Ya Yang et al.   BMC GENOMICS

Solution NMR studies of the plant peptide hormone CEP inform function

(2013) Benjamin G. Bobay et al.   FEBS LETTERS

The peptide-encoding CEP1 gene modulates lateral root and nodule numbers in Medicago truncatula

(2013) N. Imin et al.   JOURNAL OF EXPERIMENTAL BOTANY

Analysis of the transcriptome ofHirschmanniella oryzaeto explore potential survival strategies and host-nematode interactions

(2013) Lander Bauters et al.   MOLECULAR PLANT PATHOLOGY

Top 10 plant-parasitic nematodes in molecular plant pathology

(2013) John T. Jones et al.   MOLECULAR PLANT PATHOLOGY

Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga

(2013) Jean-François Flot et al.   NATURE

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

BLAST: a more efficient report with usability improvements

(2013) Grzegorz M. Boratyn et al.   NUCLEIC ACIDS RESEARCH

Phylogenetic relationships among populations of theNacobbus aberrans(Nematoda, Pratylenchidae) complex reveal the existence of cryptic species

(2013) Paola Lax et al.   ZOOLOGICA SCRIPTA

Nematode-Induced Endoreduplication in Plant Host Cells: Why and How?

(2012) Janice de Almeida Engler et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Manipulation of Plant Cells by Cyst and Root-Knot Nematode Effectors

(2012) Tarek Hewezi et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Differential analysis of gene regulation at transcript resolution with RNA-seq

(2012) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

The Effector SPRYSEC-19 of Globodera rostochiensis Suppresses CC-NB-LRR-Mediated Disease Resistance in Plants

(2012) W. J. Postma et al.   PLANT PHYSIOLOGY

RNA-Seq Assembly – Are We There Yet?

(2012) Simon Schliesky et al.   Frontiers in Plant Science

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Functional roles of effectors of plant-parasitic nematodes

(2011) Annelies Haegeman et al.   GENE

Analysis of the transcriptome of the root lesion nematode Pratylenchus coffeae generated by 454 sequencing technology

(2011) Annelies Haegeman et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

Horizontal Gene Transfer in Nematodes: A Catalyst for Plant Parasitism?

(2011) Annelies Haegeman et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Identification of potential host plant mimics of CLAVATA3/ESR (CLE)-like peptides from the plant-parasitic nematode Heterodera schachtii

(2010) JIANYING WANG et al.   MOLECULAR PLANT PATHOLOGY

Speciation within Nacobbus: consilience or controversy?

(2010) Rosa Manzanilla-López   NEMATOLOGY

Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes

(2010) Etienne G. J. Danchin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Structural and Functional Diversity ofCLAVATA3/ESR(CLE)-Like Genes from the Potato Cyst NematodeGlobodera rostochiensis

(2009) Shun-Wen Lu et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Arabinogalactan endo-1,4-β-galactosidase: a putative plant cell wall-degrading enzyme of plant-parasitic nematodes

(2009) Bartel Vanholme et al.   NEMATOLOGY

A phylogenetic tree of nematodes based on about 1200 full-length small subunit ribosomal DNA sequences

(2009) Hanny van Megen et al.   NEMATOLOGY

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Small Subunit rDNA-Based Phylogeny of the Tylenchida Sheds Light on Relationships Among Some High-Impact Plant-Parasitic Nematodes and the Evolution of Plant Feeding

(2009) M. Holterman et al.   PHYTOPATHOLOGY

TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops

(2008) I. Milne et al.   BIOINFORMATICS

Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita

(2008) Pierre Abad et al.   NATURE BIOTECHNOLOGY

Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism

(2008) C. H. Opperman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Massive Horizontal Gene Transfer in Bdelloid Rotifers

(2008) E. A. Gladyshev et al.   SCIENCE