Variation in piRNA and Transposable Element Content in Strains of Drosophila melanogaster

Terminator oligo blocking efficiently eliminates rRNA fromDrosophilasmall RNA sequencing libraries

(2016) Michelle L. Wickersheim et al.   BIOTECHNIQUES

A comprehensive analysis of piRNAs from adult human testis and their relationship with genes and mobile elements

(2014) Hongseok Ha et al.   BMC GENOMICS

The Rhino-Deadlock-Cutoff Complex Licenses Noncanonical Transcription of Dual-Strand piRNA Clusters in Drosophila

(2014) Fabio Mohn et al.   CELL

Drosophila Telomeres: A Variation on the Telomerase Theme

(2014) Mary-Lou Pardue et al.   FLY

Rapid Evolution of piRNA Pathway in the Teleost Fish: Implication for an Adaptation to Transposon Diversity

(2014) Minhan Yi et al.   Genome Biology and Evolution

TEMP: a computational method for analyzing transposable element polymorphism in populations

(2014) Jiali Zhuang et al.   NUCLEIC ACIDS RESEARCH

Euchromatic Transposon Insertions Trigger Production of Novel Pi- and Endo-siRNAs at the Target Sites in the Drosophila Germline

(2014) Sergey Shpiz et al.   PLoS Genetics

Beyond transposons: the epigenetic and somatic functions of the Piwi-piRNA mechanism

(2013) Jamy C Peng et al.   CURRENT OPINION IN CELL BIOLOGY

Analysis of piRNA-Mediated Silencing of Active TEs in Drosophila melanogaster Suggests Limits on the Evolution of Host Genome Defense

(2013) Erin S. Kelleher et al.   MOLECULAR BIOLOGY AND EVOLUTION

Abundance and Distribution of Transposable Elements in Two Drosophila QTL Mapping Resources

(2013) Julie M. Cridland et al.   MOLECULAR BIOLOGY AND EVOLUTION

De novo piRNA cluster formation in the Drosophila germ line triggered by transgenes containing a transcribed transposon fragment

(2013) Ivan Olovnikov et al.   NUCLEIC ACIDS RESEARCH

Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data

(2013) Franck Rapaport et al.   GENOME BIOLOGY

Transcriptional Silencing of Transposons by Piwi and Maelstrom and Its Impact on Chromatin State and Gene Expression

(2012) Grzegorz Sienski et al.   CELL

RECURRENT AND RECENT SELECTIVE SWEEPS IN THE piRNA PATHWAY

(2012) Alfred Simkin et al.   EVOLUTION

Long-Term and Short-Term Evolutionary Impacts of Transposable Elements on Drosophila

(2012) Yuh Chwen G. Lee et al.   GENETICS

The Drosophila melanogaster Genetic Reference Panel

(2012) Trudy F. C. Mackay et al.   NATURE

Differential analysis of gene regulation at transcript resolution with RNA-seq

(2012) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Whole Genome Resequencing Reveals Natural Target Site Preferences of Transposable Elements in Drosophila melanogaster

(2012) Raquel S. Linheiro et al.   PLoS One

Drosophila Interspecific Hybrids Phenocopy piRNA-Pathway Mutants

(2012) Erin S. Kelleher et al.   PLOS BIOLOGY

Sequencing of Pooled DNA Samples (Pool-Seq) Uncovers Complex Dynamics of Transposable Element Insertions in Drosophila melanogaster

(2012) Robert Kofler et al.   PLoS Genetics

Adaptation to P Element Transposon Invasion in Drosophila melanogaster

(2011) Jaspreet S. Khurana et al.   CELL

Human piRNAs Are Under Selection in Africans and Repress Transposable Elements

(2011) S. Lukic et al.   MOLECULAR BIOLOGY AND EVOLUTION

PIWI-interacting small RNAs: the vanguard of genome defence

(2011) Mikiko C. Siomi et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

A role for transcription from a piRNA cluster in de novo piRNA production

(2011) S. Kawaoka et al.   RNA

Population Genomics of Transposable Elements in Drosophila melanogaster

(2010) D. A. Petrov et al.   MOLECULAR BIOLOGY AND EVOLUTION

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE

(2010) et al.   SCIENCE

Distinct Functions for the Drosophila piRNA Pathway in Genome Maintenance and Telomere Protection

(2010) Jaspreet S. Khurana et al.   PLoS Genetics

A Broadly Conserved Pathway Generates 3′UTR-Directed Primary piRNAs

(2009) Nicolas Robine et al.   CURRENT BIOLOGY

Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in Drosophila

(2009) J. Lu et al.   GENOME RESEARCH

Systems genetics of complex traits in Drosophila melanogaster

(2009) Julien F Ayroles et al.   NATURE GENETICS

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

An Epigenetic Role for Maternally Inherited piRNAs in Transposon Silencing

(2008) J. Brennecke et al.   SCIENCE