The Influence of Selection for Protein Stability on dN/dS Estimations

Highly Abundant Proteins Favor More Stable 3D Structures in Yeast

(2013) Adrian W.R. Serohijos et al.   BIOPHYSICAL JOURNAL

Why Does a Protein’s Evolutionary Rate Vary over Time?

(2013) Xiangjun Du et al.   Genome Biology and Evolution

Population Size Dependence of Fitness Effect Distribution and Substitution Rate Probed by Biophysical Model of Protein Thermostability

(2013) Richard A. Goldstein   Genome Biology and Evolution

Contribution of Selection for Protein Folding Stability in Shaping the Patterns of Polymorphisms in Coding Regions

(2013) Adrian W.R. Serohijos et al.   MOLECULAR BIOLOGY AND EVOLUTION

Emerging methods in protein co-evolution

(2013) David de Juan et al.   NATURE REVIEWS GENETICS

MISTIC: mutual information server to infer coevolution

(2013) Franco L. Simonetti et al.   NUCLEIC ACIDS RESEARCH

Positively Selected Sites in Cetacean Myoglobins Contribute to Protein Stability

(2013) Pouria Dasmeh et al.   PLoS Computational Biology

Molecular phylogenetics: principles and practice

(2012) Ziheng Yang et al.   NATURE REVIEWS GENETICS

Amino acid coevolution induces an evolutionary Stokes shift

(2012) D. D. Pollock et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Protein Biophysics Explains Why Highly Abundant Proteins Evolve Slowly

(2012) Adrian W.R. Serohijos et al.   Cell Reports

Bridging the gap between chemistry, physiology, and evolution: Quantifying the functionality of sperm whale myoglobin mutants

(2011) Pouria Dasmeh et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Topology of protein interaction network shapes protein abundances and strengths of their functional and nonspecific interactions

(2011) M. Heo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A biophysical protein folding model accounts for most mutational fitness effects in viruses

(2011) C. S. Wylie et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Estimating Divergence Time and Ancestral Effective Population Size of Bornean and Sumatran Orangutan Subspecies Using a Coalescent Hidden Markov Model

(2011) Thomas Mailund et al.   PLoS Genetics

Mutational effects and the evolution of new protein functions

(2010) Misha Soskine et al.   NATURE REVIEWS GENETICS

Universal distribution of protein evolution rates as a consequence of protein folding physics

(2010) A. E. Lobkovsky et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The evolution and evolutionary consequences of marginal thermostability in proteins

(2010) Richard A. Goldstein   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Lethal Mutagenesis in Viruses and Bacteria

(2009) P. Chen et al.   GENETICS

Highly Expressed and Slowly Evolving Proteins Share Compositional Properties with Thermophilic Proteins

(2009) J. L. Cherry   MOLECULAR BIOLOGY AND EVOLUTION

Effective population size and patterns of molecular evolution and variation

(2009) Brian Charlesworth   NATURE REVIEWS GENETICS

From fitness landscapes to seascapes: non-equilibrium dynamics of selection and adaptation

(2009) Ville Mustonen et al.   TRENDS IN GENETICS

Mistranslation-Induced Protein Misfolding as a Dominant Constraint on Coding-Sequence Evolution

(2008) D. Allan Drummond et al.   CELL

The structure of protein evolution and the evolution of protein structure

(2008) Richard A Goldstein   CURRENT OPINION IN STRUCTURAL BIOLOGY

Natural Selection against Protein Aggregation on Self-Interacting and Essential Proteins in Yeast, Fly, and Worm

(2008) Y. Chen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phenylalanine-508 mediates a cytoplasmic-membrane domain contact in the CFTR 3D structure crucial to assembly and channel function

(2008) A. W. R. Serohijos et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA