Natural Selection on Coding and Noncoding DNA Sequences Is Associated with Virulence Genes in a Plant Pathogenic Fungus

Gene expression drives local adaptation in humans

(2013) H. B. Fraser   GENOME RESEARCH

CodonPhyML: Fast Maximum Likelihood Phylogeny Estimation under Codon Substitution Models

(2013) Manuel Gil et al.   MOLECULAR BIOLOGY AND EVOLUTION

Apoplastic immunity and its suppression by filamentous plant pathogens

(2013) Gunther Doehlemann et al.   NEW PHYTOLOGIST

The Microbial Rosetta Stone Central Agricultural Database: An Information Resource on High-Consequence Plant Pathogens

(2013) Sophia Kamenidou et al.   PLANT DISEASE

Widespread Selection Across Coding and Noncoding DNA in the Pea Aphid Genome

(2013) Ryan D. Bickel et al.   G3-Genes Genomes Genetics

Structure and evolution of barley powdery mildew effector candidates

(2012) Carsten Pedersen et al.   BMC GENOMICS

The Evolutionary Imprint of Domestication on Genome Variation and Function of the Filamentous Fungus Aspergillus oryzae

(2012) John G. Gibbons et al.   CURRENT BIOLOGY

Evolution of three Pyrenophora cereal pathogens: Recent divergence, speciation and evolution of non-coding DNA

(2012) Simon R. Ellwood et al.   FUNGAL GENETICS AND BIOLOGY

Genes under positive selection in a model plant pathogenic fungus, Botrytis

(2012) Gabriela Aguileta et al.   INFECTION GENETICS AND EVOLUTION

The Top 10 fungal pathogens in molecular plant pathology

(2012) RALPH DEAN et al.   MOLECULAR PLANT PATHOLOGY

An integrated encyclopedia of DNA elements in the human genome

(2012)   NATURE

Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses

(2012) Richard J O'Connell et al.   NATURE GENETICS

Plant Defense Mechanisms Are Activated during Biotrophic and Necrotrophic Development of Colletotricum graminicola in Maize

(2012) W. A. Vargas et al.   PLANT PHYSIOLOGY

Colletotrichum – current status and future directions

(2012) P.F. Cannon et al.   STUDIES IN MYCOLOGY

DFVF: database of fungal virulence factors

(2012) T. Lu et al.   Database-The Journal of Biological Databases and Curation

The making of a new pathogen: Insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species

(2011) E. H. Stukenbrock et al.   GENOME RESEARCH

Evolution of adaptive phenotypic traits without positive Darwinian selection

(2011) A L Hughes   HEREDITY

What is a functional genetic polymorphism? Defining classes of functionality

(2011) Paul Albert   JOURNAL OF PSYCHIATRY & NEUROSCIENCE

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Genomics of biotrophy in fungi and oomycetes—emerging patterns

(2010) Pietro Spanu et al.   CURRENT OPINION IN PLANT BIOLOGY

Population genomic sequencing of Coccidioides fungi reveals recent hybridization and transposon control

(2010) D. E. Neafsey et al.   GENOME RESEARCH

Natural selection on cis and trans regulation in yeasts

(2010) J. J. Emerson et al.   GENOME RESEARCH

Positive and Negative Selection on Noncoding DNA Close to Protein-Coding Genes in Wild House Mice

(2010) Athanasios Kousathanas et al.   MOLECULAR BIOLOGY AND EVOLUTION

Finding candidate genes under positive selection in Non-model species: examples of genes involved in host specialization in pathogens

(2010) G. AGUILETA et al.   MOLECULAR ECOLOGY

Contrasts between adaptive coding and noncoding changes during human evolution

(2010) Ralph Haygood et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Whole-Genome and Chromosome Evolution Associated with Host Adaptation and Speciation of the Wheat Pathogen Mycosphaerella graminicola

(2010) Eva H. Stukenbrock et al.   PLoS Genetics

Detecting positive selection in the budding yeast genome

(2009) Y.-D. LI et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

3′ UTRs Are the Primary Regulators of Gene Expression in the C. elegans Germline

(2008) Christopher Merritt et al.   CURRENT BIOLOGY

Mapping short DNA sequencing reads and calling variants using mapping quality scores

(2008) H. Li et al.   GENOME RESEARCH

Positive and Negative Selection on Noncoding DNA in Drosophila simulans

(2008) P. R. Haddrill et al.   MOLECULAR BIOLOGY AND EVOLUTION

Duplicated Paralogous Genes Subject to Positive Selection in the Genome of Trypanosoma brucei

(2008) Richard D. Emes et al.   PLoS One

A Catalog of Neutral and Deleterious Polymorphism in Yeast

(2008) Scott W. Doniger et al.   PLoS Genetics

Patterns of Positive Selection in Six Mammalian Genomes

(2008) Carolin Kosiol et al.   PLoS Genetics