Life in an Arsenic-Containing Gold Mine: Genome and Physiology of the Autotrophic Arsenite-Oxidizing Bacterium Rhizobium sp. NT-26

TPMS: a set of utilities for querying collections of gene trees

(2013) Thomas Bigot et al.   BMC BIOINFORMATICS

Involvement of RpoN in Regulating Bacterial Arsenite Oxidation

(2012) Yoon-Suk Kang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Arsenics as bioenergetic substrates

(2012) Robert van Lis et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Rapid and simultaneous detection of linear chromosome and large plasmids in Proteobacteria

(2012) Martha Helena Ramírez-Bahena et al.   JOURNAL OF BASIC MICROBIOLOGY

Rhizobial extrachromosomal replicon variability, stability and expression in natural niches

(2012) Martha G. López-Guerrero et al.   PLASMID

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Unsuspected Diversity of Arsenite-Oxidizing Bacteria as Revealed by Widespread Distribution of theaoxBGene in Prokaryotes

(2011) Audrey Heinrich-Salmeron et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Temporal transcriptomic response during arsenic stress in Herminiimonas arsenicoxydans

(2011) Jessica Cleiss-Arnold et al.   BMC GENOMICS

ACC deaminase activity in avirulent Agrobacterium tumefaciens D3

(2011) Youai Hao et al.   CANADIAN JOURNAL OF MICROBIOLOGY

A periplasmic arsenite-binding protein involved in regulating arsenite oxidation

(2011) Guanghui Liu et al.   ENVIRONMENTAL MICROBIOLOGY

Genomic Species Are Ecological Species as Revealed by Comparative Genomics in Agrobacterium tumefaciens

(2011) Florent Lassalle et al.   Genome Biology and Evolution

Metabolic diversity among main microorganisms inside an arsenic-rich ecosystem revealed by meta- and proteo-genomics

(2011) Philippe N Bertin et al.   ISME Journal

Subinhibitory Arsenite Concentrations Lead to Population Dispersal in Thiomonas sp.

(2011) Marie Marchal et al.   PLoS One

BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments

(2010) Alexis Criscuolo et al.   BMC EVOLUTIONARY BIOLOGY

Multiple controls affect arsenite oxidase gene expression in Herminiimonas arsenicoxydans

(2010) Sandrine Koechler et al.   BMC MICROBIOLOGY

Characterization of a two-component signal transduction system that controls arsenite oxidation in the chemolithoautotroph NT-26

(2010) Sunita Sardiwal et al.   FEMS MICROBIOLOGY LETTERS

Inference of Homologous Recombination in Bacteria Using Whole-Genome Sequences

(2010) X. Didelot et al.   GENETICS

Arsenite Oxidase fromRalstoniasp. 22

(2010) Aurélie Lieutaud et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Effect of arsenite on swimming motility delays surface colonization in Herminiimonas arsenicoxydans

(2010) M. Marchal et al.   MICROBIOLOGY-SGM

The Complete Genome Sequence of Cupriavidus metallidurans Strain CH34, a Master Survivalist in Harsh and Anthropogenic Environments

(2010) Paul J. Janssen et al.   PLoS One

Introducing the bacterial ‘chromid’: not a chromosome, not a plasmid

(2010) Peter W. Harrison et al.   TRENDS IN MICROBIOLOGY

Structure, Function, and Evolution of the Thiomonas spp. Genome

(2010) Florence Arsène-Ploetze et al.   PLoS Genetics

Proteogenomic Monitoring of Geobacter Physiology during Stimulated Uranium Bioremediation

(2009) M. J. Wilkins et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Databases of homologous gene families for comparative genomics

(2009) Simon Penel et al.   BMC BIOINFORMATICS

Carbon and arsenic metabolism in Thiomonas strains: differences revealed diverse adaptation processes

(2009) Christopher G Bryan et al.   BMC MICROBIOLOGY

Comparison of Two Multimetal Resistant Bacterial Strains: Enterobacter sp. YSU and Stenotrophomonas maltophilia ORO2

(2009) Andrew Holmes et al.   CURRENT MICROBIOLOGY

Biogeochemical Redox Processes and their Impact on Contaminant Dynamics

(2009) Thomas Borch et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Genome Sequences of Three Agrobacterium Biovars Help Elucidate the Evolution of Multichromosome Genomes in Bacteria

(2009) S. C. Slater et al.   JOURNAL OF BACTERIOLOGY

Metals, minerals and microbes: geomicrobiology and bioremediation

(2009) G. M. Gadd   MICROBIOLOGY-SGM

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Acquisition of phosphorus and nitrogen in the rhizosphere and plant growth promotion by microorganisms

(2009) Alan E. Richardson et al.   PLANT AND SOIL

MicroScope: a platform for microbial genome annotation and comparative genomics

(2009) D. Vallenet et al.   Database-The Journal of Biological Databases and Curation

Enhanced structural and functional genome elucidation of the arsenite-oxidizing strain Herminiimonas arsenicoxydans by proteomics data

(2008) Stéphanie Weiss et al.   BIOCHIMIE

High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies

(2008) Jean-Marc Aury et al.   BMC GENOMICS

Sequencing and expression of two arsenic resistance operons with different functions in the highly arsenic-resistant strain Ochrobactrum tritici SCII24T

(2008) Rita Branco et al.   BMC MICROBIOLOGY

Recent developments in the MAFFT multiple sequence alignment program

(2008) K. Katoh et al.   BRIEFINGS IN BIOINFORMATICS

Effect of flagella expression on adhesion ofAchromobacter piechaudiito chalk surfaces

(2008) A. Nejidat et al.   JOURNAL OF APPLIED MICROBIOLOGY

Role of the Global Transcriptional Regulator PrrA in Rhodobacter sphaeroides 2.4.1: Combined Transcriptome and Proteome Analysis

(2008) J. M. Eraso et al.   JOURNAL OF BACTERIOLOGY

Advances in environmental genomics: towards an integrated view of micro-organisms and ecosystems

(2008) P. N. Bertin et al.   MICROBIOLOGY-SGM

An Improved General Amino Acid Replacement Matrix

(2008) S. Q. Le et al.   MOLECULAR BIOLOGY AND EVOLUTION