Comparative interactomics with Funcoup 2.0

A Two-tiered compensatory response to loss of DNA repair modulates aging and stress response pathways

(2016) Øyvind Fensgård et al.   Aging-US

GraphCrunch 2: Software tool for network modeling, alignment and clustering

(2011) Oleksii Kuchaiev et al.   BMC BIOINFORMATICS

Gerontome: a web-based database server for aging-related genes and analysis pipelines

(2010) Jekeun Kwon et al.   BMC GENOMICS

Analysis of lipid pathway genes indicates association of sequence variation near SREBF1/TOM1L2/ATPAF2 with dementia risk

(2010) Chandra A. Reynolds et al.   HUMAN MOLECULAR GENETICS

Ensembl 2011

(2010) P. Flicek et al.   NUCLEIC ACIDS RESEARCH

Pathway Commons, a web resource for biological pathway data

(2010) E. G. Cerami et al.   NUCLEIC ACIDS RESEARCH

The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function

(2010) David Warde-Farley et al.   NUCLEIC ACIDS RESEARCH

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

(2010) D. Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

The Genetic Landscape of a Cell

(2010) M. Costanzo et al.   SCIENCE

Evaluation of linguistic features useful in extraction of interactions from PubMed; Application to annotating known, high-throughput and predicted interactions in I2D

(2009) Yun Niu et al.   BIOINFORMATICS

Comparative analysis and unification of domain–domain interaction networks

(2009) Patrik Björkholm et al.   BIOINFORMATICS

IsoRankN: spectral methods for global alignment of multiple protein networks

(2009) C.-S. Liao et al.   BIOINFORMATICS

Global transcriptional response after exposure of fission yeast cells to ultraviolet light

(2009) Henriette C Skjølberg et al.   BMC CELL BIOLOGY

Global networks of functional coupling in eukaryotes from comprehensive data integration

(2009) A. Alexeyenko et al.   GENOME RESEARCH

VisANT 3.5: multi-scale network visualization, analysis and inference based on the gene ontology

(2009) Zhenjun Hu et al.   NUCLEIC ACIDS RESEARCH

InParanoid 7: new algorithms and tools for eukaryotic orthology analysis

(2009) G. Ostlund et al.   NUCLEIC ACIDS RESEARCH

The IntAct molecular interaction database in 2010

(2009) B. Aranda et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

jSquid: a Java applet for graphical on-line network exploration

(2008) Martin Klammer et al.   BIOINFORMATICS

NetworkBLAST: comparative analysis of protein networks

(2008) M. Kalaev et al.   BIOINFORMATICS

ConsensusPathDB—a database for integrating human functional interaction networks

(2008) Atanas Kamburov et al.   NUCLEIC ACIDS RESEARCH