Evolutionary Rate Heterogeneity of Core and Attachment Proteins in Yeast Protein Complexes

Complex-forming proteins escape the robust regulations of miRNA in human

(2013) Jyotirmoy Das et al.   FEBS LETTERS

Evolutionary Rate and Duplicability in the Arabidopsis thaliana Protein–Protein Interaction Network

(2012) David Alvarez-Ponce et al.   Genome Biology and Evolution

GOChase-II: correcting semantic inconsistencies from Gene Ontology-based annotations for gene products

(2011) Yu Rang Park et al.   BMC BIOINFORMATICS

Molecular Evolution, Mutation Size and Gene Pleiotropy: A Geometric Reexamination

(2011) P. Razeto-Barry et al.   GENETICS

Factors that Contribute to Variation in Evolutionary Rate among Arabidopsis Genes

(2011) L. Yang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast

(2011) C. Miller et al.   Molecular Systems Biology

MINT, the molecular interaction database: 2012 update

(2011) Luana Licata et al.   NUCLEIC ACIDS RESEARCH

The IntAct molecular interaction database in 2012

(2011) S. Kerrien et al.   NUCLEIC ACIDS RESEARCH

OGEE: an online gene essentiality database

(2011) Wei-Hua Chen et al.   NUCLEIC ACIDS RESEARCH

Saccharomyces Genome Database: the genomics resource of budding yeast

(2011) J. M. Cherry et al.   NUCLEIC ACIDS RESEARCH

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Protein complex forming ability is favored over the features of interacting partners in determining the evolutionary rates of proteins in the yeast protein-protein interaction networks

(2010) Sandip Chakraborty et al.   BMC Systems Biology

A Consensus of Core Protein Complex Compositions for Saccharomyces cerevisiae

(2010) Joris J. Benschop et al.   MOLECULAR CELL

MIPS: curated databases and comprehensive secondary data resources in 2010

(2010) H. Werner Mewes et al.   NUCLEIC ACIDS RESEARCH

Ensembl 2011

(2010) P. Flicek et al.   NUCLEIC ACIDS RESEARCH

Exploiting gene deletion fitness effects in yeast to understand the modular architecture of protein complexes under different growth conditions

(2009) Roland A Pache et al.   BMC Systems Biology

Multifunctionality dominantly determines the rate of human housekeeping and tissue specific interacting protein evolution

(2009) Soumita Podder et al.   GENE

A preliminary analysis of gene pleiotropy estimated from protein sequences

(2009) Zhixi Su et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

A structural approach for finding functional modules from large biological networks

(2008) Mutlu Mete et al.   BMC BIOINFORMATICS

A simple principle concerning the robustness of protein complex activity to changes in gene expression

(2008) Jennifer I Semple et al.   BMC Systems Biology

Mistranslation-Induced Protein Misfolding as a Dominant Constraint on Coding-Sequence Evolution

(2008) D. Allan Drummond et al.   CELL

Are protein complexes made of cores, modules and attachments?

(2008) Chi Nam Ignatius Pang et al.   PROTEOMICS

Predicting Co-Complexed Protein Pairs from Heterogeneous Data

(2008) Jian Qiu et al.   PLoS Computational Biology