Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast

Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data

(2010) Benedikt Zacher et al.   BMC BIOINFORMATICS

The HOG Pathway Dictates the Short-Term Translational Response after Hyperosmotic Shock

(2010) Jonas Warringer et al.   MOLECULAR BIOLOGY OF THE CELL

Global coordination of transcriptional control and mRNA decay during cellular differentiation

(2010) Maria J Amorim et al.   Molecular Systems Biology

Uniform transitions of the general RNA polymerase II transcription complex

(2010) Andreas Mayer et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The distribution of active RNA polymerase II along the transcribed region is gene-specific and controlled by elongation factors

(2010) Alfonso Rodríguez-Gil et al.   NUCLEIC ACIDS RESEARCH

There is a steady-state transcriptome in exponentially growing yeast cells

(2010) Vicent Pelechano et al.   YEAST

A Systems-Level Analysis of Perfect Adaptation in Yeast Osmoregulation

(2009) Dale Muzzey et al.   CELL

Multilayered control of gene expression by stress-activated protein kinases

(2009) Eulàlia de Nadal et al.   EMBO JOURNAL

A canonical promoter organization of the transcription machinery and its regulators in the Saccharomyces genome

(2009) B. J. Venters et al.   GENOME RESEARCH

TorpedoNuclease Rat1 Is Insufficient to Terminate RNA Polymerase IIin Vitro

(2009) Stefan Dengl et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Metabolic tagging and purification of nascent RNA: implications for transcriptomics

(2009) Caroline C. Friedel et al.   Molecular BioSystems

Global analysis of the yeast osmotic stress response by quantitative proteomics

(2009) Boumediene Soufi et al.   Molecular BioSystems

Structural Basis of Transcription: Mismatch-Specific Fidelity Mechanisms and Paused RNA Polymerase II with Frayed RNA

(2009) Jasmin F. Sydow et al.   MOLECULAR CELL

TU-tagging: cell type–specific RNA isolation from intact complex tissues

(2009) Michael R Miller et al.   NATURE METHODS

mRNA stability changes precede changes in steady-state mRNA amounts during hyperosmotic stress

(2009) C. Molin et al.   RNA

Specific and global regulation of mRNA stability during osmotic stress in Saccharomyces cerevisiae

(2009) L. Romero-Santacreu et al.   RNA

Dynamic Signaling in the Hog1 MAPK Pathway Relies on High Basal Signal Transduction

(2009) J. Macia et al.   Science Signaling

Stress-Dependent Coordination of Transcriptome and Translatome in Yeast

(2009) Regula E Halbeisen et al.   PLOS BIOLOGY

Regulon-Specific Control of Transcription Elongation across the Yeast Genome

(2009) Vicent Pelechano et al.   PLoS Genetics

Transient transcriptional responses to stress are generated by opposing effects of mRNA production and degradation

(2008) Ophir Shalem et al.   Molecular Systems Biology

Structure and function of a transcriptional network activated by the MAPK Hog1

(2008) Andrew P Capaldi et al.   NATURE GENETICS

Yeast translational response to high salinity: Global analysis reveals regulation at multiple levels

(2008) D. Melamed et al.   RNA

High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay

(2008) L. Dolken et al.   RNA

The Frequency Dependence of Osmo-Adaptation in Saccharomyces cerevisiae

(2008) J. T. Mettetal et al.   SCIENCE