White adipose tissue reference network: a knowledge resource for exploring health-relevant relations

Mechanisms of transcriptional regulation by WT1 (Wilms’ tumour 1)

(2015) Eneda Toska et al.   BIOCHEMICAL JOURNAL

Phenotypic flexibility as key factor in the human nutrition and health relationship

(2014) Ben van Ommen et al.   Genes and Nutrition

Cell physiology: The changing colour of fat

(2014) Brian Owens   NATURE

Resveratrol Improves Adipose Insulin Signaling and Reduces the Inflammatory Response in Adipose Tissue of Rhesus Monkeys on High-Fat, High-Sugar Diet

(2013) Yolanda Jimenez-Gomez et al.   Cell Metabolism

Genotype to phenotype via network analysis

(2013) Hannah Carter et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

The Inevitable Application of Big Data to Health Care

(2013) Travis B. Murdoch et al.   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

Early biomarkers identified in a rat model of a healthier phenotype based on early postnatal dietary intervention may predict the response to an obesogenic environment in adulthood

(2013) Juana M. Torrens et al.   JOURNAL OF NUTRITIONAL BIOCHEMISTRY

Short-term, high fat feeding-induced changes in white adipose tissue gene expression are highly predictive for long-term changes

(2013) Anja Voigt et al.   MOLECULAR NUTRITION & FOOD RESEARCH

Network-based stratification of tumor mutations

(2013) Matan Hofree et al.   NATURE METHODS

Integrative approaches for finding modular structure in biological networks

(2013) Koyel Mitra et al.   NATURE REVIEWS GENETICS

Differential Effects of Drug Interventions and Dietary Lifestyle in Developing Type 2 Diabetes and Complications: A Systems Biology Analysis in LDLr−/− Mice

(2013) Marijana Radonjic et al.   PLoS One

CyTargetLinker: A Cytoscape App to Integrate Regulatory Interactions in Network Analysis

(2013) Martina Kutmon et al.   PLoS One

Personal Omics Profiling Reveals Dynamic Molecular and Medical Phenotypes

(2012) Rui Chen et al.   CELL

BIOCLAIMS standard diet (BIOsd): a reference diet for nutritional physiology

(2012) Femke P. M. Hoevenaars et al.   Genes and Nutrition

Systems analysis of eleven rodent disease models reveals an inflammatome signature and key drivers

(2012) I.-M. Wang et al.   Molecular Systems Biology

NEW: Network-Enabled Wisdom in Biology, Medicine, and Health Care

(2012) E. E. Schadt et al.   Science Translational Medicine

The Transcription Factor Encyclopedia

(2012) Dimas Yusuf et al.   GENOME BIOLOGY

A network-based biomarker approach for molecular investigation and diagnosis of lung cancer

(2011) Yu-Chao Wang et al.   BMC Medical Genomics

Exploring pathway interactions in insulin resistant mouse liver

(2011) Thomas Kelder et al.   BMC Systems Biology

Boosting Signal-to-Noise in Complex Biology: Prior Knowledge Is Power

(2011) Trey Ideker et al.   CELL

Overexpression of KLF15 Transcription Factor in Adipocytes of Mice Results in Down-regulation of SCD1 Protein Expression in Adipocytes and Consequent Enhancement of Glucose-induced Insulin Secretion

(2011) Tomoki Nagare et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Dietary restriction of mice on a high-fat diet induces substrate efficiency and improves metabolic health

(2011) Loes P M Duivenvoorde et al.   JOURNAL OF MOLECULAR ENDOCRINOLOGY

WikiPathways: building research communities on biological pathways

(2011) T. Kelder et al.   NUCLEIC ACIDS RESEARCH

Adipose Tissue Deficiency and Chronic Inflammation in Diabetic Goto-Kakizaki Rats

(2011) Bai Xue et al.   PLoS One

The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services

(2010) Martijn P van Iersel et al.   BMC BIOINFORMATICS

Network medicine: a network-based approach to human disease

(2010) Albert-László Barabási et al.   NATURE REVIEWS GENETICS

miRTarBase: a database curates experimentally validated microRNA–target interactions

(2010) Sheng-Da Hsu et al.   NUCLEIC ACIDS RESEARCH

The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function

(2010) David Warde-Farley et al.   NUCLEIC ACIDS RESEARCH

Peripheral Blood Mononuclear Cells as a Model to Study the Response of Energy Homeostasis-Related Genes to Acute Changes in Feeding Conditions

(2010) Antoni Caimari et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Systems medicine: a real approach for future personalized oncology?

(2010) Dimitrios H Roukos   PHARMACOGENOMICS

A Combined Transcriptomics and Lipidomics Analysis of Subcutaneous, Epididymal and Mesenteric Adipose Tissue Reveals Marked Functional Differences

(2010) Robert Caesar et al.   PLoS One

Finding the Right Questions: Exploratory Pathway Analysis to Enhance Biological Discovery in Large Datasets

(2010) Thomas Kelder et al.   PLOS BIOLOGY

Mitochondrial (Dys)function in Adipocyte (De)differentiation and Systemic Metabolic Alterations

(2009) Aurélia De Pauw et al.   AMERICAN JOURNAL OF PATHOLOGY

STITCH 2: an interaction network database for small molecules and proteins

(2009) Michael Kuhn et al.   NUCLEIC ACIDS RESEARCH

'Omics Data Sharing

(2009) D. Field et al.   SCIENCE

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Polymorphisms in the adiponutrin gene are associated with increased insulin secretion and obesity

(2008) Lovisa E Johansson et al.   EUROPEAN JOURNAL OF ENDOCRINOLOGY

Short-term fatty acid intervention elicits differential gene expression responses in adipose tissue from lean and overweight men

(2008) Marjan J. van Erk et al.   Genes and Nutrition

Genetic variation in PNPLA3 confers susceptibility to nonalcoholic fatty liver disease

(2008) Stefano Romeo et al.   NATURE GENETICS

STRING 8--a global view on proteins and their functional interactions in 630 organisms

(2008) L. J. Jensen et al.   NUCLEIC ACIDS RESEARCH

Lifestyle intervention in the management of metabolic syndrome: could we improve adherence issues?

(2008) Evaggelia Fappa et al.   NUTRITION

Assessment of Diet-induced Obese Rats as an Obesity Model by Comparative Functional Genomics

(2008) Shuyu Li et al.   Obesity

MiR-15a and miR-16-1 cluster functions in human leukemia

(2008) George A. Calin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pioglitazone versus Rosiglitazone: Effects on Lipids, Lipoproteins, and Apolipoproteins in Head-to-Head Randomized Clinical Studies

(2008) Mark A. Deeg et al.   PPAR Research