Specific loop modifications of the thrombin-binding aptamer trigger the formation of parallel structures

Dramatic Effect of Furanose C2′ Substitution on Structure and Stability: Directing the Folding of the Human Telomeric Quadruplex with a Single Fluorine Atom

(2013) Nerea Martín-Pintado et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Bulges in G-Quadruplexes: Broadening the Definition of G-Quadruplex-Forming Sequences

(2013) Vineeth Thachappilly Mukundan et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

The Kinetics and Folding Pathways of Intramolecular G-Quadruplex Nucleic Acids

(2012) Amy Y. Q. Zhang et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Structure of Triplex DNA in the Gas Phase

(2012) Annalisa Arcella et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Ammonium Ion Binding to DNA G-Quadruplexes: Do Electrospray Mass Spectra Faithfully Reflect the Solution-Phase Species?

(2012) Françoise Balthasart et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Mass spectrometry and ion mobility spectrometry of G-quadruplexes. A study of solvent effects on dimer formation and structural transitions in the telomeric DNA sequence d(TAGGGTTAGGGT)

(2012) Rubén Ferreira et al.   METHODS

Studying the effect of crowding and dehydration on DNA G-quadruplexes

(2012) Luigi Petraccone et al.   METHODS

High-resolution structures of two complexes between thrombin and thrombin-binding aptamer shed light on the role of cations in the aptamer inhibitory activity

(2012) Irene Russo Krauss et al.   NUCLEIC ACIDS RESEARCH

Loop residues of thrombin-binding DNA aptamer impact G-quadruplex stability and thrombin binding

(2011) Satoru Nagatoishi et al.   BIOCHIMIE

Thrombin–aptamer recognition: a revealed ambiguity

(2011) Irene Russo Krauss et al.   NUCLEIC ACIDS RESEARCH

Interaction between double helix DNA fragments and the new antitumor agent sabarubicin, Men10755

(2010) Stefania Mazzini et al.   BIOORGANIC & MEDICINAL CHEMISTRY

Hydration Is a Major Determinant of the G-Quadruplex Stability and Conformation of the Human Telomere 3′ Sequence of d(AG3(TTAG3)3)

(2010) M. Clarke Miller et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Improved thrombin binding aptamer by incorporation of a single unlocked nucleic acid monomer

(2010) Anna Pasternak et al.   NUCLEIC ACIDS RESEARCH

How long is too long? Effects of loop size on G-quadruplex stability

(2010) Aurore Guédin et al.   NUCLEIC ACIDS RESEARCH

Zwitterionic i-motif structures are preserved in DNA negatively charged ions produced by electrospray mass spectrometry

(2010) Frederic Rosu et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Nucleic Acid Aptamers Based on the G-Quadruplex Structure: Therapeutic and Diagnostic Potential

(2009) B. Gatto et al.   CURRENT MEDICINAL CHEMISTRY

The structures of quadruplex nucleic acids and their drug complexes

(2009) Stephen Neidle   CURRENT OPINION IN STRUCTURAL BIOLOGY

Conformationally rigid nucleoside probes help understand the role of sugar pucker and nucleobase orientation in the thrombin-binding aptamer

(2009) Hisao Saneyoshi et al.   NUCLEIC ACIDS RESEARCH

Cation localization and movement within DNA thrombin binding aptamer in solution

(2009) Marko Trajkovski et al.   ORGANIC & BIOMOLECULAR CHEMISTRY

An Atomistic View to the Gas Phase Proteome

(2009) Tim Meyer et al.   STRUCTURE

Synthesis, structural studies and biological properties of new TBA analogues containing an acyclic nucleotide

(2008) Teresa Coppola et al.   BIOORGANIC & MEDICINAL CHEMISTRY

Effect of Locked-Nucleic Acid on a Biologically Active G-Quadruplex. A Structure-Activity Relationship of the Thrombin Aptamer

(2008) Laura Bonifacio et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

(2008) Berk Hess et al.   Journal of Chemical Theory and Computation

G-Quadruplex DNA Assemblies: Loop Length, Cation Identity, and Multimer Formation†

(2008) Nicolas Smargiasso et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

A hitchhiker's guide to G-quadruplex ligands

(2007) David Monchaud et al.   ORGANIC & BIOMOLECULAR CHEMISTRY