Population genomic analyses of early-phase Atlantic Salmon (Salmo salar) domestication/captive breeding

Selection for complex traits leaves little or no classic signatures of selection

(2014) Kathryn E Kemper et al.   BMC GENOMICS

Can conservation-oriented, captive breeding limit behavioural and growth divergence between offspring of wild and captive origin Atlantic salmon (Salmo salar)?

(2014) Nathan F. Wilke et al.   ECOLOGY OF FRESHWATER FISH

The Power to Detect Quantitative Trait Loci Using Resequenced, Experimentally Evolved Populations of Diploid, Sexual Organisms

(2014) James G. Baldwin-Brown et al.   MOLECULAR BIOLOGY AND EVOLUTION

Footprints of Directional Selection in Wild Atlantic Salmon Populations: Evidence for Parasite-Driven Evolution?

(2014) Ksenia J. Zueva et al.   PLoS One

Genomic changes under rapid evolution: selection for parasitoid resistance

(2014) K. M. Jalvingh et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Quantitative genetic variation of resistance against Piscirickettsia salmonis in Atlantic salmon (Salmo salar)

(2013) José Manuel Yáñez et al.   AQUACULTURE

Domestication is associated with reduced burst swimming performance and increased body size in clonal rainbow trout lines

(2013) Kristy L. Bellinger et al.   AQUACULTURE

Recent advances of genome mapping and marker-assisted selection in aquaculture

(2013) Gen Hua Yue   FISH AND FISHERIES

How Much Does Inbreeding Contribute to the Reduced Fitness of Hatchery-Born Steelhead (Oncorhynchus mykiss) in the Wild?

(2013) M. R. Christie et al.   JOURNAL OF HEREDITY

Parallel and nonparallel genome-wide divergence among replicate population pairs of freshwater and anadromous Atlantic salmon

(2013) Charles Perrier et al.   MOLECULAR ECOLOGY

Life history trade-offs at a single locus maintain sexually selected genetic variation

(2013) Susan E. Johnston et al.   NATURE

Genomic signatures of selection at linked sites: unifying the disparity among species

(2013) Asher D. Cutter et al.   NATURE REVIEWS GENETICS

Does Domestication Cause Changes in Growth Reaction Norms? A Study of Farmed, Wild and Hybrid Atlantic Salmon Families Exposed to Environmental Stress

(2013) Monica Favnebøe Solberg et al.   PLoS One

Population genomics of rapid adaptation by soft selective sweeps

(2013) Philipp W. Messer et al.   TRENDS IN ECOLOGY & EVOLUTION

Signatures of Diversifying Selection in European Pig Breeds

(2013) Samantha Wilkinson et al.   PLoS Genetics

Assessing footprints of selection in commercial Atlantic salmon populations using microsatellite data

(2012) V. Martinez et al.   ANIMAL GENETICS

Uninformative polymorphisms bias genome scans for signatures of selection

(2012) Marius Roesti et al.   BMC EVOLUTIONARY BIOLOGY

Evolutionary forces shaping genomic islands of population differentiation in humans

(2012) Tamara Hofer et al.   BMC GENOMICS

Screen for Footprints of Selection during Domestication/Captive Breeding of Atlantic Salmon

(2012) Anti Vasemägi et al.   COMPARATIVE AND FUNCTIONAL GENOMICS

Reduced fitness of Atlantic salmon released in the wild after one generation of captive breeding

(2012) Emmanuel Milot et al.   Evolutionary Applications

The implications for aquaculture practice of epigenomic programming of components of the endocrine system of teleostean embryos: lessons learned from mammalian studies

(2012) Mao Li et al.   FISH AND FISHERIES

SNP-array reveals genome-wide patterns of geographical and potential adaptive divergence across the natural range of Atlantic salmon (Salmo salar)

(2012) Vincent Bourret et al.   MOLECULAR ECOLOGY

Adaptation ofDrosophilato a novel laboratory environment reveals temporally heterogeneous trajectories of selected alleles

(2012) PABLO OROZCO-terWENGEL et al.   MOLECULAR ECOLOGY

A dense SNP-based linkage map for Atlantic salmon (Salmo salar) reveals extended chromosome homeologies and striking differences in sex-specific recombination patterns

(2011) Sigbjørn Lien et al.   BMC GENOMICS

Reduced recruitment performance in natural populations of anadromous salmonids associated with hatchery-reared fish

(2011) M. W. Chilcote et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

The effect of recurrent mutation on the linkage disequilibrium under a selective sweep

(2011) Cornelia Pokalyuk   JOURNAL OF MATHEMATICAL BIOLOGY

Population genomics of wild and laboratory zebrafish (Danio rerio)

(2011) ANDREW R. WHITELEY et al.   MOLECULAR ECOLOGY

Generic genetic differences between farmed and wild Atlantic salmon identified from a 7K SNP-chip

(2011) STEN KARLSSON et al.   Molecular Ecology Resources

Comparison ofFSToutlier tests for SNP loci under selection

(2011) SHAWN R. NARUM et al.   Molecular Ecology Resources

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

Is hatchery stocking a help or harm?

(2010) Hitoshi Araki et al.   AQUACULTURE

Comparative genomic analysis of Atlantic salmon, Salmo salar, from Europe and North America

(2010) Krzysztof P Lubieniecki et al.   BMC GENETICS

The Genetics of Human Adaptation: Hard Sweeps, Soft Sweeps, and Polygenic Adaptation

(2010) Jonathan K. Pritchard et al.   CURRENT BIOLOGY

Fast Transcriptional Responses to Domestication in the Brook Charr Salvelinus fontinalis

(2010) C. Sauvage et al.   GENETICS

Using Population Genomics to Detect Selection in Natural Populations: Key Concepts and Methodological Considerations

(2010)   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Whole-genome resequencing reveals loci under selection during chicken domestication

(2010) Carl-Johan Rubin et al.   NATURE

Adaptation – not by sweeps alone

(2010) Jonathan K. Pritchard et al.   NATURE REVIEWS GENETICS

Tracking footprints of artificial selection in the dog genome

(2010) J. M. Akey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Simple Genetic Architecture Underlies Morphological Variation in Dogs

(2010) Adam R. Boyko et al.   PLOS BIOLOGY

Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags

(2010) Paul A. Hohenlohe et al.   PLoS Genetics

Confirmation and fine-mapping of a major QTL for resistance to infectious pancreatic necrosis in Atlantic salmon (Salmo salar): population-level associations between markers and trait

(2009) Thomas Moen et al.   BMC GENOMICS

Constructing genomic maps of positive selection in humans: Where do we go from here?

(2009) J. M. Akey   GENOME RESEARCH

Detecting loci under selection in a hierarchically structured population

(2009) L Excoffier et al.   HEREDITY

Divergent selection and heterogeneous genomic divergence

(2009) PATRIK NOSIL et al.   MOLECULAR ECOLOGY

quantiNemo: an individual-based program to simulate quantitative traits with explicit genetic architecture in a dynamic metapopulation

(2008) S. Neuenschwander et al.   BIOINFORMATICS

SYNTHESIS: A review of quantitative genetic components of fitness in salmonids: implications for adaptation to future change

(2008) Stephanie M. Carlson et al.   Evolutionary Applications

SYNTHESIS: Fitness of hatchery-reared salmonids in the wild

(2008) Hitoshi Araki et al.   Evolutionary Applications

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation

(2008) Luis López-Maury et al.   NATURE REVIEWS GENETICS

The Trouble with Sliding Windows and the Selective Pressure in BRCA1

(2008) Karl Schmid et al.   PLoS One

A Global Assessment of Salmon Aquaculture Impacts on Wild Salmonids

(2008) Jennifer S Ford et al.   PLOS BIOLOGY

The nature of fisheries- and farming-induced evolution

(2007) JEFFREY A. HUTCHINGS et al.   MOLECULAR ECOLOGY

Genetic adaptation to captivity in species conservation programs

(2007) RICHARD FRANKHAM   MOLECULAR ECOLOGY