Using RNA sequencing for identifying gene imprinting and random monoallelic expression in human placenta

DNA methylation at imprint regulatory regions in preterm birth and infection

(2013) Ying Liu et al.   AMERICAN JOURNAL OF OBSTETRICS AND GYNECOLOGY

DNMT1 and AIM1 Imprinting in human placenta revealed through a genome-wide screen for allele-specific DNA methylation

(2013) Radhika Das et al.   BMC GENOMICS

Control of Autophagic Cell Death by Caspase-10 in Multiple Myeloma

(2013) Laurence Lamy et al.   CANCER CELL

Identification of Wilms' Tumor 1-associating Protein Complex and Its Role in Alternative Splicing and the Cell Cycle

(2013) Keiko Horiuchi et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Paternally expressed genes predominate in the placenta

(2013) X. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A genome-wide approach reveals novel imprinted genes expressed in the human placenta

(2012) Sandrine Barbaux et al.   Epigenetics

AIM1 and LINE-1 Epigenetic Aberrations in Tumor and Serum Relate to Melanoma Progression and Disease Outcome

(2012) Sojun Hoshimoto et al.   JOURNAL OF INVESTIGATIVE DERMATOLOGY

Epigenetic state and expression of imprinted genes in umbilical cord correlates with growth parameters in human pregnancy

(2012) Ai Lin Lim et al.   JOURNAL OF MEDICAL GENETICS

Galectin 8 targets damaged vesicles for autophagy to defend cells against bacterial invasion

(2012) Teresa L. M. Thurston et al.   NATURE

Mechanisms and consequences of widespread random monoallelic expression

(2012) Andrew Chess   NATURE REVIEWS GENETICS

The UCSC Genome Browser database: extensions and updates 2013

(2012) Laurence R. Meyer et al.   NUCLEIC ACIDS RESEARCH

Identification of Differential Gene Expression Profiles in Placentas from Preeclamptic Pregnancies Versus Normal Pregnancies by DNA Microarrays

(2012) Tao Meng et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

The origin and evolution of genomic imprinting and viviparity in mammals

(2012) M. B. Renfree et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

MicroRNA-34c Enhances Murine Male Germ Cell Apoptosis through Targeting ATF1

(2012) Xiaoxuan Liang et al.   PLoS One

Differences in Gene Expression between First and Third Trimester Human Placenta: A Microarray Study

(2012) Vasilis Sitras et al.   PLoS One

High-Throughput Transcriptomic and RNAi Analysis Identifies AIM1, ERGIC1, TMED3 and TPX2 as Potential Drug Targets in Prostate Cancer

(2012) Paula Vainio et al.   PLoS One

Mid-Gestational Gene Expression Profile in Placenta and Link to Pregnancy Complications

(2012) Liis Uusküla et al.   PLoS One

Cell Surface Galectin-9 Expressing Th Cells Regulate Th17 and Foxp3+ Treg Development by Galectin-9 Secretion

(2012) Souichi Oomizu et al.   PLoS One

BCLAF1 is a radiation-induced H2AX-interacting partner involved in γH2AX-mediated regulation of apoptosis and DNA repair

(2012) Y Y Lee et al.   Cell Death & Disease

SHRiMP2: Sensitive yet Practical Short Read Mapping

(2011) Matei David et al.   BIOINFORMATICS

A Survey for Novel Imprinted Genes in the Mouse Placenta by mRNA-seq

(2011) Xu Wang et al.   GENETICS

The 5-HT7 receptor in learning and memory

(2011) Amanda J. Roberts et al.   HIPPOCAMPUS

A polymorphism of the interferon-gamma-inducible protein 30 gene is associated with hyperglycemia in severely obese individuals

(2011) V. Turcot et al.   HUMAN GENETICS

GILT Modulates CD4+ T-Cell Tolerance to the Melanocyte Differentiation Antigen Tyrosinase-Related Protein 1

(2011) Matthew P. Rausch et al.   JOURNAL OF INVESTIGATIVE DERMATOLOGY

Control of Central and Peripheral Tolerance to Melanocyte Differentiation Antigens by GILT

(2011) Jürgen C. Becker et al.   JOURNAL OF INVESTIGATIVE DERMATOLOGY

Genetic contribution to C-reactive protein levels in severe obesity

(2011) Geneviève Faucher et al.   MOLECULAR GENETICS AND METABOLISM

AlleleSeq: analysis of allele-specific expression and binding in a network framework

(2011) J. Rozowsky et al.   Molecular Systems Biology

Galectin-8 is expressed by villous and extravillous trophoblast of the human placenta

(2011) N. Kolundžić et al.   PLACENTA

In Search of a Function for BCLAF1

(2011) Haya Sarras et al.   TheScientificWorldJOURNAL

Genome-wide mapping of imprinted differentially methylated regions by DNA methylation profiling of human placentas from triploidies

(2011) Ryan KC Yuen et al.   Epigenetics & Chromatin

Genomic loss of imprinting in first-trimester human placenta

(2010) Yevgeniya Pozharny et al.   AMERICAN JOURNAL OF OBSTETRICS AND GYNECOLOGY

High-throughput analysis of candidate imprinted genes and allele-specific gene expression in the human term placenta

(2010) Caroline Daelemans et al.   BMC GENETICS

Germline Variation in Apoptosis Pathway Genes and Risk of Non-Hodgkin's Lymphoma

(2010) J. L. Kelly et al.   CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION

A sensitive functional assay reveals frequent loss of genomic imprinting in human placenta

(2010) Luca Lambertini et al.   Epigenetics

Altered levels of insulin-like growth factor binding protein proteases in preeclampsia and intrauterine growth restriction

(2010) Julian K. Christians et al.   PRENATAL DIAGNOSIS

The Importance of Imprinting in the Human Placenta

(2010) Jennifer M. Frost et al.   PLoS Genetics

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data

(2009) Jacob F. Degner et al.   BIOINFORMATICS

Expression of pregnancy-associated plasma protein A2 during pregnancy in human and mouse

(2009) Joyce Wang et al.   JOURNAL OF ENDOCRINOLOGY

Soluble intercellular adhesion molecule-1, D-lactate and diamine oxidase in patients with inflammatory bowel disease

(2009) Wei-Bing Song et al.   WORLD JOURNAL OF GASTROENTEROLOGY

Genetic Determinants of Circulating Sphingolipid Concentrations in European Populations

(2009) Andrew A. Hicks et al.   PLoS Genetics

Rho GTPases of the RhoBTB subfamily and tumorigenesis

(2008) Jessica BERTHOLD et al.   ACTA PHARMACOLOGICA SINICA

Gamma-IFN-inducible-lysosomal thiol reductase modulates acidic proteases and HLA class II antigen processing in melanoma

(2008) Oliver G. Goldstein et al.   CANCER IMMUNOLOGY IMMUNOTHERAPY

Essential role for Bclaf1 in lung development and immune system function

(2008) J Peter McPherson et al.   CELL DEATH AND DIFFERENTIATION

Global Survey of Genomic Imprinting by Transcriptome Sequencing

(2008) Tomas Babak et al.   CURRENT BIOLOGY