Systems biology-based approaches toward understanding drought tolerance in food crops

Molecular targets of oxidative stress

(2011) Simon V. Avery   BIOCHEMICAL JOURNAL

Improved Drought and Salt Tolerance in Transgenic Arabidopsis Overexpressing a NAC Transcriptional Factor fromArachis hypogaea

(2011) Xu LIU et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Genome-Wide Survey and Expression Analysis of the Plant-Specific NAC Transcription Factor Family in Soybean During Development and Dehydration Stress

(2011) D. T. Le et al.   DNA RESEARCH

Genome-Wide Expression Profiling of Soybean Two-Component System Genes in Soybean Root and Shoot Tissues under Dehydration Stress

(2011) D. T. Le et al.   DNA RESEARCH

ABA-mediated transcriptional regulation in response to osmotic stress in plants

(2011) Yasunari Fujita et al.   JOURNAL OF PLANT RESEARCH

Dehydration-Responsive Reversible and Irreversible Changes in the Extracellular Matrix: Comparative Proteomics of Chickpea Genotypes with Contrasting Tolerance

(2011) Deepti Bhushan et al.   JOURNAL OF PROTEOME RESEARCH

Green systems biology — From single genomes, proteomes and metabolomes to ecosystems research and biotechnology

(2011) Wolfram Weckwerth   Journal of Proteomics

Differential proteomics of plant development

(2011) Tomáš Takáč et al.   Journal of Proteomics

Plant proteome changes under abiotic stress — Contribution of proteomics studies to understanding plant stress response

(2011) Klára Kosová et al.   Journal of Proteomics

Global Landscape of a Co-Expressed Gene Network in Barley and its Application to Gene Discovery in Triticeae Crops

(2011) Keiichi Mochida et al.   PLANT AND CELL PHYSIOLOGY

A Sister Group Contrast Using Untargeted Global Metabolomic Analysis Delineates the Biochemical Regulation Underlying Desiccation Tolerance inSporobolus stapfianus

(2011) Melvin J. Oliver et al.   PLANT CELL

Plant tolerance to drought and salinity: stress regulating transcription factors and their functional significance in the cellular transcriptional network

(2011) Dortje Golldack et al.   PLANT CELL REPORTS

Photosynthesis in desiccation tolerant plants: Energy metabolism and antioxidative stress defense

(2011) Challabathula Dinakar et al.   PLANT SCIENCE

Rice proteomics: A move toward expanded proteome coverage to comparative and functional proteomics uncovers the mysteries of rice and plant biology

(2011) Ganesh Kumar Agrawal et al.   PROTEOMICS

Evidence for Network Evolution in an Arabidopsis Interactome Map

(2011) et al.   SCIENCE

The Green Proteome: Challenges in Plant Proteomics

(2011) Joshua L. Heazlewood   Frontiers in Plant Science

ARAG1, an ABA-responsive DREB gene, plays a role in seed germination and drought tolerance of rice

(2010) Lifeng Zhao et al.   ANNALS OF BOTANY

Prediction of novel miRNAs and associated target genes in Glycine max

(2010) Trupti Joshi et al.   BMC BIOINFORMATICS

Metabolomics: Creating new potentials for unraveling the mechanisms in response to salt and drought stress and for the biotechnological improvement of xero-halophytes

(2010) Cheng-Jiang Ruan et al.   CRITICAL REVIEWS IN BIOTECHNOLOGY

Roles of enzymatic and nonenzymatic antioxidants in plants during abiotic stress

(2010) Parvaiz Ahmad et al.   CRITICAL REVIEWS IN BIOTECHNOLOGY

‘Omics’ analyses of regulatory networks in plant abiotic stress responses

(2010) Kaoru Urano et al.   CURRENT OPINION IN PLANT BIOLOGY

CE-MS for metabolomics: Developments and applications in the period 2008-2010

(2010) Rawi Ramautar et al.   ELECTROPHORESIS

Functional genomics of soybean for improvement of productivity in adverse conditions

(2010) Lam-Son Phan Tran et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

A Subset of Cytokinin Two-component Signaling System Plays a Role in Cold Temperature Stress Response inArabidopsis

(2010) Jin Jeon et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Plant physiology and proteomics reveals the leaf response to drought in alfalfa (Medicago sativa L.)

(2010) Iker Aranjuelo et al.   JOURNAL OF EXPERIMENTAL BOTANY

Monitoring the Expression of Maize Genes in Developing Kernels under Drought Stress using Oligo-microarray

(2010) Meng Luo et al.   Journal of Integrative Plant Biology

Identification of microRNAs and their targets in switchgrass, a model biofuel plant species

(2010) Jessica Matts et al.   JOURNAL OF PLANT PHYSIOLOGY

Desiccation-induced physiological and biochemical changes in resurrection plant, Selaginella bryopteris

(2010) Vivek Pandey et al.   JOURNAL OF PLANT PHYSIOLOGY

Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses

(2010) Ning Xia et al.   MOLECULAR BIOLOGY REPORTS

Molecular analysis of two salt-responsive NAC-family genes and their expression analysis in tomato

(2010) Rongchao Yang et al.   MOLECULAR BIOLOGY REPORTS

Global expression profiling of rice microRNAs by one-tube stem-loop reverse transcription quantitative PCR revealed important roles of microRNAs in abiotic stress responses

(2010) Jianqiang Shen et al.   MOLECULAR GENETICS AND GENOMICS

Comprehensive analysis of rice DREB2-type genes that encode transcription factors involved in the expression of abiotic stress-responsive genes

(2010) Satoko Matsukura et al.   MOLECULAR GENETICS AND GENOMICS

Narrowing Down the Targets: Towards Successful Genetic Engineering of Drought-Tolerant Crops

(2010) Shujun Yang et al.   Molecular Plant

Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection

(2010) Hon-Ming Lam et al.   NATURE GENETICS

PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database

(2010) He Zhang et al.   NUCLEIC ACIDS RESEARCH

ArrayExpress update--an archive of microarray and high-throughput sequencing-based functional genomics experiments

(2010) H. Parkinson et al.   NUCLEIC ACIDS RESEARCH

Molecular Basis of the Core Regulatory Network in ABA Responses: Sensing, Signaling and Transport

(2010) T. Umezawa et al.   PLANT AND CELL PHYSIOLOGY

MicroRNA402 Affects Seed Germination of Arabidopsis thaliana Under Stress Conditions via Targeting DEMETER-LIKE Protein3 mRNA

(2010) J. Y. Kim et al.   PLANT AND CELL PHYSIOLOGY

Genomics and Bioinformatics Resources for Crop Improvement

(2010) K. Mochida et al.   PLANT AND CELL PHYSIOLOGY

Proteome analysis of soybean roots subjected to short-term drought stress

(2010) Iftekhar Alam et al.   PLANT AND SOIL

Progress studies of drought-responsive genes in rice

(2010) Toto Hadiarto et al.   PLANT CELL REPORTS

Protocol: fine-tuning of a Chromatin Immunoprecipitation (ChIP) protocol in tomato

(2010) Martiniano M Ricardi et al.   Plant Methods

Large-Scale Comparative Phosphoproteomics Identifies Conserved Phosphorylation Sites in Plants

(2010) H. Nakagami et al.   PLANT PHYSIOLOGY

Proteomic study of Carissa spinarum in response to combined heat and drought stress

(2010) Minhua Zhang et al.   PROTEOMICS

Shotgun proteomic analysis for detecting differentially expressed proteins in the reduced culm number rice

(2010) Joohyun Lee et al.   PROTEOMICS

Expansin-regulated cell elongation is involved in the drought tolerance in wheat

(2010) Mei-rong Zhao et al.   PROTOPLASMA

Breeding Technologies to Increase Crop Production in a Changing World

(2010) M. Tester et al.   SCIENCE

Food Security: The Challenge of Feeding 9 Billion People

(2010) H. C. J. Godfray et al.   SCIENCE

Drought under global warming: a review

(2010) Aiguo Dai   Wiley Interdisciplinary Reviews-Climate Change

Increased tolerance of rice to cold, drought and oxidative stresses mediated by the overexpression of a gene that encodes the zinc finger protein ZFP245

(2009) Ji Huang et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Overexpression of a NAC transcription factor enhances rice drought and salt tolerance

(2009) Xingnan Zheng et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Inducing drought tolerance in plants: Recent advances

(2009) M. Ashraf   BIOTECHNOLOGY ADVANCES

Members of miR-169 family are induced by high salinity and transiently inhibit the NF-YA transcription factor

(2009) Botao Zhao et al.   BMC MOLECULAR BIOLOGY

Plant Protein-Protein Interaction Network and Interactome

(2009) Yixiang Zhang et al.   CURRENT GENOMICS

Integrated omics approaches in plant systems biology

(2009) Atsushi Fukushima et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Epigenetic regulation of stress responses in plants

(2009) Viswanathan Chinnusamy et al.   CURRENT OPINION IN PLANT BIOLOGY

A previously unknown zinc finger protein, DST, regulates drought and salt tolerance in rice via stomatal aperture control

(2009) X.-Y. Huang et al.   GENES & DEVELOPMENT

High-throughput genotyping by whole-genome resequencing

(2009) X. Huang et al.   GENOME RESEARCH

A NAC transcription factor gene of Chickpea (Cicer arietinum), CarNAC3, is involved in drought stress response and various developmental processes

(2009) Hui Peng et al.   JOURNAL OF PLANT PHYSIOLOGY

Exogenous proline and glycinebetaine increase antioxidant enzyme activities and confer tolerance to cadmium stress in cultured tobacco cells

(2009) Mohammad Muzahidul Islam et al.   JOURNAL OF PLANT PHYSIOLOGY

Plant proteomics update (2007–2008): Second-generation proteomic techniques, an appropriate experimental design, and data analysis to fulfill MIAPE standards, increase plant proteome coverage and expand biological knowledge

(2009) Jesús V. Jorrín-Novo et al.   Journal of Proteomics

Molecular characterization of stress-inducible GmNAC genes in soybean

(2009) Lam-Son Phan Tran et al.   MOLECULAR GENETICS AND GENOMICS

A transcriptome atlas of rice cell types uncovers cellular, functional and developmental hierarchies

(2009) Yuling Jiao et al.   NATURE GENETICS

Insights from genomic profiling of transcription factors

(2009) Peggy J. Farnham   NATURE REVIEWS GENETICS

Application of NMR in plant metabolomics: techniques, problems and prospects

(2009) Jan Schripsema   PHYTOCHEMICAL ANALYSIS

Physiological and Molecular Approaches to Improve Drought Resistance in Soybean

(2009) L. P. Manavalan et al.   PLANT AND CELL PHYSIOLOGY

Three Arabidopsis SnRK2 Protein Kinases, SRK2D/SnRK2.2, SRK2E/SnRK2.6/OST1 and SRK2I/SnRK2.3, Involved in ABA Signaling are Essential for the Control of Seed Development and Dormancy

(2009) Kazuo Nakashima et al.   PLANT AND CELL PHYSIOLOGY

Evaluation of diverse soybean germplasm for root growth and architecture

(2009) Lakshmi P. Manavalan et al.   PLANT AND SOIL

Global Identification of Targets of the Arabidopsis MADS Domain Protein AGAMOUS-Like15

(2009) Y. Zheng et al.   PLANT CELL

Regulation of growth response to water stress in the soybean primary root. I. Proteomic analysis reveals region-specific regulation of phenylpropanoid metabolism and control of free iron in the elongation zone

(2009) MINEO YAMAGUCHI et al.   PLANT CELL AND ENVIRONMENT

Chromatin regulation functions in plant abiotic stress responses

(2009) JONG-MYONG KIM et al.   PLANT CELL AND ENVIRONMENT

Expression profile of calcium-dependent protein kinase (CDPKs) genes during the whole lifespan and under phytohormone treatment conditions in rice (Oryza sativa L. ssp. indica)

(2009) Shuifeng Ye et al.   PLANT MOLECULAR BIOLOGY

A Raf-Like MAPKKK Gene DSM1 Mediates Drought Resistance through Reactive Oxygen Species Scavenging in Rice

(2009) J. Ning et al.   PLANT PHYSIOLOGY

Transcriptional Regulatory Networks in Response to Abiotic Stresses in Arabidopsis and Grasses

(2009) K. Nakashima et al.   PLANT PHYSIOLOGY

Overexpression of the Transcription Factor AP37 in Rice Improves Grain Yield under Drought Conditions

(2009) S.-J. Oh et al.   PLANT PHYSIOLOGY

Large-Scale Phosphoprotein Analysis in Medicago truncatula Roots Provides Insight into in Vivo Kinase Activity in Legumes

(2009) P. A. Grimsrud et al.   PLANT PHYSIOLOGY

Tolerance to various environmental stresses conferred by the salt-responsive rice gene ONAC063 in transgenic Arabidopsis

(2009) Naoki Yokotani et al.   PLANTA

A combined15N tracing/proteomics study inBrassica napusreveals the chronology of proteomics events associated with N remobilisation during leaf senescence induced by nitrate limitation or starvation

(2009) Marie Desclos et al.   PROTEOMICS

Towards a systems-based understanding of plant desiccation tolerance

(2009) John P. Moore et al.   TRENDS IN PLANT SCIENCE

The 1001 Genomes Project for Arabidopsis thaliana

(2009) Detlef Weigel et al.   GENOME BIOLOGY

Over-expression of OsDREB genes lead to enhanced drought tolerance in rice

(2008) Jian-Qiang Chen et al.   BIOTECHNOLOGY LETTERS

The zinc finger network of plants

(2008) S. Ciftci-Yilmaz et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

No single way to understand singlet oxygen signalling in plants

(2008) Chanhong Kim et al.   EMBO REPORTS

Overexpression of a TFIIIA-type zinc finger protein geneZFP252enhances drought and salt tolerance in rice (Oryza sativaL.)

(2008) Dong-Qing Xu et al.   FEBS LETTERS

Applications of High-Resolution Solid-State NMR Spectroscopy in Food Science

(2008) Fabio Bertocchi et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Mass spectrometry for the identification of the discriminating signals from metabolomics: Current status and future trends

(2008) Erwan Werner et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

Toward an Interaction Map of the Two-Component Signaling Pathway ofArabidopsis thaliana

(2008) Hakan Dortay et al.   JOURNAL OF PROTEOME RESEARCH

Soybean proteomics and its application to functional analysis

(2008) Setsuko Komatsu et al.   Journal of Proteomics

Systematic analysis of NPK1-like genes in rice reveals a stress-inducible gene cluster co-localized with a quantitative trait locus of drought resistance

(2008) Jing Ning et al.   MOLECULAR GENETICS AND GENOMICS

Systematic sequence analysis and identification of tissue-specific or stress-responsive genes of NAC transcription factor family in rice

(2008) Yujie Fang et al.   MOLECULAR GENETICS AND GENOMICS

Evaluation of Seven Function-Known Candidate Genes for their Effects on Improving Drought Resistance of Transgenic Rice under Field Conditions

(2008) Ben-Ze Xiao et al.   Molecular Plant

Retrotransposons and siRNA have a role in the evolution of desiccation tolerance leading to resurrection of the plantCraterostigma plantagineum

(2008) Tobias Hilbricht et al.   NEW PHYTOLOGIST

P3DB: a plant protein phosphorylation database

(2008) J. Gao et al.   NUCLEIC ACIDS RESEARCH

NCBI GEO: archive for high-throughput functional genomic data

(2008) T. Barrett et al.   NUCLEIC ACIDS RESEARCH

Adaptations of higher plant cell walls to water loss: drought vs desiccation

(2008) John P. Moore et al.   PHYSIOLOGIA PLANTARUM

Arabidopsis Transcriptome Analysis under Drought, Cold, High-Salinity and ABA Treatment Conditions using a Tiling Array

(2008) A. Matsui et al.   PLANT AND CELL PHYSIOLOGY

The Arabidopsis NFYA5 Transcription Factor Is Regulated Transcriptionally and Posttranscriptionally to Promote Drought Resistance

(2008) W.-X. Li et al.   PLANT CELL

Systematic approaches to using the FOX hunting system to identify useful rice genes

(2008) Youichi Kondou et al.   PLANT JOURNAL

Characterization of transcription factor gene SNAC2 conferring cold and salt tolerance in rice

(2008) Honghong Hu et al.   PLANT MOLECULAR BIOLOGY

Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice

(2008) Qiuyun Wang et al.   PLANT MOLECULAR BIOLOGY

A Rice Kinase-Protein Interaction Map

(2008) X. Ding et al.   PLANT PHYSIOLOGY

Vegetative desiccation tolerance: Is it a goldmine for bioengineering crops?

(2008) Ottó Toldi et al.   PLANT SCIENCE

Reconstituting plant miRNA biogenesis

(2008) J.-K. Zhu   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant systems biology comes of age

(2008) Joshua S. Yuan et al.   TRENDS IN PLANT SCIENCE

Charting plant interactomes: possibilities and challenges

(2008) Mustafa Morsy et al.   TRENDS IN PLANT SCIENCE