Global Landscape of a Co-Expressed Gene Network in Barley and its Application to Gene Discovery in Triticeae Crops

NeMo: Network Module identification in Cytoscape

(2010) Corban G Rivera et al.   BMC BIOINFORMATICS

Regulation of plant biomass production

(2010) Taku Demura et al.   CURRENT OPINION IN PLANT BIOLOGY

Genetic and genomic tools to improve drought tolerance in wheat

(2010) D. Fleury et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome sequencing and analysis of the model grass Brachypodium distachyon

(2010) John P. Vogel et al.   NATURE

Genome sequence of the palaeopolyploid soybean

(2010) Jeremy Schmutz et al.   NATURE

ArrayExpress update--an archive of microarray and high-throughput sequencing-based functional genomics experiments

(2010) H. Parkinson et al.   NUCLEIC ACIDS RESEARCH

RiceXPro: a platform for monitoring gene expression in japonica rice grown under natural field conditions

(2010) Y. Sato et al.   NUCLEIC ACIDS RESEARCH

AgBase: supporting functional modeling in agricultural organisms

(2010) Fiona M. McCarthy et al.   NUCLEIC ACIDS RESEARCH

NCBI GEO: archive for functional genomics data sets--10 years on

(2010) T. Barrett et al.   NUCLEIC ACIDS RESEARCH

AtCAST, a Tool for Exploring Gene Expression Similarities among DNA Microarray Experiments Using Networks

(2010) Eriko Sasaki et al.   PLANT AND CELL PHYSIOLOGY

OryzaExpress: An Integrated Database of Gene Expression Networks and Omics Annotations in Rice

(2010) Kazuki Hamada et al.   PLANT AND CELL PHYSIOLOGY

Genomics and Bioinformatics Resources for Crop Improvement

(2010) K. Mochida et al.   PLANT AND CELL PHYSIOLOGY

Over-expression of specific HvCslF cellulose synthase-like genes in transgenic barley increases the levels of cell wall (1,3;1,4)-β-d-glucans and alters their fine structure

(2010) Rachel A. Burton et al.   PLANT BIOTECHNOLOGY JOURNAL

Arabidopsis - a powerful model system for plant cell wall research

(2010) Aaron H. Liepman et al.   PLANT JOURNAL

Development and implementation of high-throughput SNP genotyping in barley

(2009) Timothy J Close et al.   BMC GENOMICS

Omics meet networks—using systems approaches to infer regulatory networks in plants

(2009) Miguel A Moreno-Risueno et al.   CURRENT OPINION IN PLANT BIOLOGY

Development of 5006 Full-Length CDNAs in Barley: A Tool for Accessing Cereal Genomics Resources

(2009) K. Sato et al.   DNA RESEARCH

Rank of Correlation Coefficient as a Comparable Measure for Biological Significance of Gene Coexpression

(2009) T. Obayashi et al.   DNA RESEARCH

Identifying target traits and molecular mechanisms for wheat breeding under a changing climate

(2009) Mikhail A. Semenov et al.   JOURNAL OF EXPERIMENTAL BOTANY

Web-Queryable Large-Scale Data Sets for Hypothesis Generation in Plant Biology

(2009) S. M. Brady et al.   PLANT CELL

MYB58 and MYB63 Are Transcriptional Activators of the Lignin Biosynthetic Pathway during Secondary Cell Wall Formation in Arabidopsis

(2009) J. Zhou et al.   PLANT CELL

A Chloroplastic UDP-Glucose Pyrophosphorylase from Arabidopsis Is the Committed Enzyme for the First Step of Sulfolipid Biosynthesis

(2009) Y. Okazaki et al.   PLANT CELL

RiceArrayNet: A Database for Correlating Gene Expression from Transcriptome Profiling, and Its Application to the Analysis of Coexpressed Genes in Rice

(2009) T.-H. Lee et al.   PLANT PHYSIOLOGY

TriFLDB: A Database of Clustered Full-Length Coding Sequences from Triticeae with Applications to Comparative Grass Genomics

(2009) K. Mochida et al.   PLANT PHYSIOLOGY

The International Barley Sequencing Consortium--At the Threshold of Efficient Access to the Barley Genome

(2009) D. Schulte et al.   PLANT PHYSIOLOGY

Unraveling Transcriptional Control in Arabidopsis Using cis-Regulatory Elements and Coexpression Networks

(2009) K. Vandepoele et al.   PLANT PHYSIOLOGY

TriMEDB: A database to integrate transcribed markers and facilitate genetic studies of the tribe Triticeae

(2008) Keiichi Mochida et al.   BMC PLANT BIOLOGY

Unique aspects of the grass cell wall

(2008) J VOGEL   CURRENT OPINION IN PLANT BIOLOGY

Dehydrin gene expression provides an indicator of low temperature and drought stress: transcriptome-based analysis of Barley (Hordeum vulgare L.)

(2008) Livia Tommasini et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH

ATTED-II provides coexpressed gene networks for Arabidopsis

(2008) T. Obayashi et al.   NUCLEIC ACIDS RESEARCH

NCBI GEO: archive for high-throughput functional genomic data

(2008) T. Barrett et al.   NUCLEIC ACIDS RESEARCH

Separated Transcriptomes of Male Gametophyte and Tapetum in Rice: Validity of a Laser Microdissection (LM) Microarray

(2008) Keita Suwabe et al.   PLANT AND CELL PHYSIOLOGY

Comprehensive Flavonol Profiling and Transcriptome Coexpression Analysis Leading to Decoding Gene-Metabolite Correlations in Arabidopsis

(2008) K. Yonekura-Sakakibara et al.   PLANT CELL

The AtGenExpress hormone and chemical treatment data set: experimental design, data evaluation, model data analysis and data access

(2008) Hideki Goda et al.   PLANT JOURNAL

The Genetics and Transcriptional Profiles of the Cellulose Synthase-Like HvCslF Gene Family in Barley

(2008) R. A. Burton et al.   PLANT PHYSIOLOGY