Photophysical processes in single molecule organic fluorescent probes

Manganese-Induced Triplet Blinking and Photobleaching of Single Molecule Cyanine Dyes

(2013) Monika A. Ciuba et al.   CHEMPHYSCHEM

AMPA receptor/TARP stoichiometry visualized by single-molecule subunit counting

(2013) P. Hastie et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Extending Microscopic Resolution with Single-Molecule Imaging and Active Control

(2012) Michael A. Thompson et al.   Annual Review of Biophysics

Live-Cell Super-Resolution Imaging with Synthetic Fluorophores

(2012) Sebastian van de Linde et al.   Annual Review of Physical Chemistry

Photophysics of Fluorescent Probes for Single-Molecule Biophysics and Super-Resolution Imaging

(2012) Taekjip Ha et al.   Annual Review of Physical Chemistry

The Structure of Sulfoindocarbocyanine 3 Terminally Attached to dsDNA via a Long, Flexible Tether

(2012) Linas Urnavicius et al.   BIOPHYSICAL JOURNAL

Photobleaching and Blinking of TAMRA Induced by Mn2+

(2012) Elana M. S. Stennett et al.   CHEMPHYSCHEM

'Self-healing' dyes: intramolecular stabilization of organic fluorophores

(2012) Philip Tinnefeld et al.   NATURE METHODS

Additions & corrections published in 2012

(2012)   PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES

Probing the Interaction Between Fluorophores and DNA Nucleotides by Fluorescence Correlation Spectroscopy and Fluorescence Quenching†

(2012) Suman Ranjit et al.   PHOTOCHEMISTRY AND PHOTOBIOLOGY

Reporting from the Field: Genetically Encoded Fluorescent Reporters Uncover Signaling Dynamics in Living Biological Systems

(2011) Sohum Mehta et al.   Annual Review of Biochemistry

Cy3-DNA Stacking Interactions Strongly Depend on the Identity of the Terminal Basepair

(2011) Justin Spiriti et al.   BIOPHYSICAL JOURNAL

Fluorescent and luminescent probes for detection of reactive oxygen and nitrogen species

(2011) Xiaoqiang Chen et al.   CHEMICAL SOCIETY REVIEWS

Conformational Flexibility of Glycosylated Peptides

(2011) Stefan Bollmann et al.   CHEMPHYSCHEM

Central dogma at the single-molecule level in living cells

(2011) Gene-Wei Li et al.   NATURE

Probing cellular protein complexes using single-molecule pull-down

(2011) Ankur Jain et al.   NATURE

Cyanine fluorophore derivatives with enhanced photostability

(2011) Roger B Altman et al.   NATURE METHODS

Direct stochastic optical reconstruction microscopy with standard fluorescent probes

(2011) Sebastian van de Linde et al.   Nature Protocols

Protein induced fluorescence enhancement as a single molecule assay with short distance sensitivity

(2011) H. Hwang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Superoxide-induced bleaching of streptocyanine dyes: Application to assay the enzymatic activity of superoxide dismutases

(2010) Virginie Vinatier et al.   ANALYTICAL BIOCHEMISTRY

Superresolution Imaging using Single-Molecule Localization

(2010) George Patterson et al.   Annual Review of Physical Chemistry

Counting Bungarotoxin Binding Sites of Nicotinic Acetylcholine Receptors in Mammalian Cells with High Signal/Noise Ratios

(2010) Paul D. Simonson et al.   BIOPHYSICAL JOURNAL

Breaking the Diffraction Barrier: Super-Resolution Imaging of Cells

(2010) Bo Huang et al.   CELL

Make them Blink: Probes for Super-Resolution Microscopy

(2010) Jan Vogelsang et al.   CHEMPHYSCHEM

A Versatile Route to Red-Emitting Carbopyronine Dyes for Optical Microscopy and Nanoscopy

(2010) Kirill Kolmakov et al.   EUROPEAN JOURNAL OF ORGANIC CHEMISTRY

Identification of Protein-Protein and Protein-Ribosome Interacting Regions of the C-terminal Tail of Human Mitochondrial Inner Membrane Protein Oxa1L

(2010) Md. Emdadul Haque et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The effect of photoswitching kinetics and labeling densities on super-resolution fluorescence imaging

(2010) Sebastian van de Linde et al.   JOURNAL OF BIOTECHNOLOGY

Mechanisms of Quenching of Alexa Fluorophores by Natural Amino Acids

(2010) Huimin Chen et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Live-cell super-resolution imaging with trimethoprim conjugates

(2010) Richard Wombacher et al.   NATURE METHODS

Live-cell dSTORM with SNAP-tag fusion proteins

(2010) Teresa Klein et al.   NATURE METHODS

Photoinduced formation of reversible dye radicals and their impact on super-resolution imaging

(2010) Sebastian van de Linde et al.   PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES

Cyanine dyes in biophysical research: the photophysics of polymethine fluorescent dyes in biomolecular environments

(2010) Marcia Levitus et al.   QUARTERLY REVIEWS OF BIOPHYSICS

Super-Resolution Imaging with Small Organic Fluorophores

(2009) Mike Heilemann et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Super-Resolution Fluorescence Microscopy

(2009) Bo Huang et al.   Annual Review of Biochemistry

spFRET Using Alternating Excitation and FCS Reveals Progressive DNA Unwrapping in Nucleosomes

(2009) W.J.A. Koopmans et al.   BIOPHYSICAL JOURNAL

Light-Induced Dark States of Organic Fluochromes Enable 30 nm Resolution Imaging in Standard Media

(2009) David Baddeley et al.   BIOPHYSICAL JOURNAL

Synthesis and applications of Rhodamine derivatives as fluorescent probes

(2009) Mariana Beija et al.   CHEMICAL SOCIETY REVIEWS

Fluorescence Quenching by Photoinduced Electron Transfer: A Reporter for Conformational Dynamics of Macromolecules

(2009) Sören Doose et al.   CHEMPHYSCHEM

Photophysics of Backbone Fluorescent DNA Modifications: Reducing Uncertainties in FRET

(2009) Suman Ranjit et al.   JOURNAL OF PHYSICAL CHEMISTRY B

On the Mechanism of Trolox as Antiblinking and Antibleaching Reagent

(2009) Thorben Cordes et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Fluorescent Lifetime Trajectories of a Single Fluorophore Reveal Reaction Intermediates During Transcription Initiation

(2009) Maria Sorokina et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Photoswitching Mechanism of Cyanine Dyes

(2009) Graham T. Dempsey et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Photoswitches: Key molecules for subdiffraction-resolution fluorescence imaging and molecular quantification

(2009) M. Heilemann et al.   Laser & Photonics Reviews

Resolving Single-Molecule Assembled Patterns with Superresolution Blink-Microscopy

(2009) Thorben Cordes et al.   NANO LETTERS

DNA sequence-dependent enhancement of Cy3 fluorescence

(2009) Billie Jo Harvey et al.   PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES

Multicolor photoswitching microscopy for subdiffraction-resolution fluorescence imaging

(2009) Sebastian van de Linde et al.   PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES

Why kinesin is so processive

(2009) E. Toprak et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Controlling the fluorescence of ordinary oxazine dyes for single-molecule switching and superresolution microscopy

(2009) J. Vogelsang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Reducing and Oxidizing System Minimizes Photobleaching and Blinking of Fluorescent Dyes

(2008) Jan Vogelsang et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Subdiffraction-Resolution Fluorescence Imaging with Conventional Fluorescent Probes

(2008) Mike Heilemann et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Translation at the Single-Molecule Level

(2008) R. Andrew Marshall et al.   Annual Review of Biochemistry

Single-Molecule Studies of Protein Folding

(2008) Alessandro Borgia et al.   Annual Review of Biochemistry

Advances in Single-Molecule Fluorescence Methods for Molecular Biology

(2008) Chirlmin Joo et al.   Annual Review of Biochemistry

The Structure of Cyanine 5 Terminally Attached to Double-Stranded DNA: Implications for FRET Studies†

(2008) Asif Iqbal et al.   BIOCHEMISTRY

Protein folding studied by single-molecule FRET

(2008) Benjamin Schuler et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Fluorescent proteins for single-molecule fluorescence applications

(2008) Britta Seefeldt et al.   Journal of Biophotonics

Nucleosome Dynamics as Studied by Single-pair Fluorescence Resonance Energy Transfer: A Reevaluation

(2008) Miroslav Tomschik et al.   JOURNAL OF FLUORESCENCE

Single Molecule Fluorescence of Native and Refolded Peridinin–Chlorophyll–Protein Complexes

(2008) Stephan Wörmke et al.   JOURNAL OF FLUORESCENCE

Nucleobase-Specific Enhancement of Cy3 Fluorescence

(2008) Billie J. Harvey et al.   JOURNAL OF FLUORESCENCE

Superresolution Microscopy on the Basis of Engineered Dark States

(2008) Christian Steinhauer et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Direct observation of the nanoscale dynamics of membrane lipids in a living cell

(2008) Christian Eggeling et al.   NATURE

Photoswitchable fluorescent proteins enable monochromatic multilabel imaging and dual color fluorescence nanoscopy

(2008) Martin Andresen et al.   NATURE BIOTECHNOLOGY

Improving the photostability of bright monomeric orange and red fluorescent proteins

(2008) Nathan C Shaner et al.   NATURE METHODS

Whole-cell 3D STORM reveals interactions between cellular structures with nanometer-scale resolution

(2008) Bo Huang et al.   NATURE METHODS

A practical guide to single-molecule FRET

(2008) Rahul Roy et al.   NATURE METHODS

Super-resolution imaging in live Caulobacter crescentus cells using photoswitchable EYFP

(2008) Julie S Biteen et al.   NATURE METHODS

Characterization of new fluorescent labels for ultra-high resolution microscopy

(2008) Andriy Chmyrov et al.   PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES

Oxygen uptake induced by electron transfer from donors to the triplet state of methylene blue and xanthene dyes in air-saturated aqueous solution

(2008) Helmut Görner   PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES

Pitfalls and limitations in the practical use of Förster's theory of resonance energy transfer

(2008) Silvia E. Braslavsky et al.   PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES

Orientation dependence in fluorescent energy transfer between Cy3 and Cy5 terminally attached to double-stranded nucleic acids

(2008) A. Iqbal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An Oxygen Scavenging System for Improvement of Dye Stability in Single-Molecule Fluorescence Experiments

(2007) Colin Echeverría Aitken et al.   BIOPHYSICAL JOURNAL