Complex Ancestries of Isoprenoid Synthesis in Dinoflagellates

Endosymbiosis undone by stepwise elimination of the plastid in a parasitic dinoflagellate

(2015) Sebastian G. Gornik et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Horizontal Gene Transfer and Redundancy of Tryptophan Biosynthetic Enzymes in Dinotoms

(2014) Behzad Imanian et al.   Genome Biology and Evolution

Evidence for the Retention of Two Evolutionary Distinct Plastids in Dinoflagellates with Diatom Endosymbionts

(2014) Elisabeth Hehenberger et al.   Genome Biology and Evolution

Metatranscriptome profiling of a harmful algal bloom

(2014) Endymion D. Cooper et al.   HARMFUL ALGAE

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing

(2014) Patrick J. Keeling et al.   PLOS BIOLOGY

Endosymbiotic Gene Transfer in Tertiary Plastid-Containing Dinoflagellates

(2013) Fabien Burki et al.   EUKARYOTIC CELL

Horizontal Gene Transfer is a Significant Driver of Gene Innovation in Dinoflagellates

(2013) Jennifer H. Wisecaver et al.   Genome Biology and Evolution

Dinoflagellate phylogeny revisited: Using ribosomal proteins to resolve deep branching dinoflagellate clades

(2013) Tsvetan R. Bachvaroff et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

GenBank

(2013) Dennis A. Benson et al.   NUCLEIC ACIDS RESEARCH

Re-evaluating the Green versus Red Signal in Eukaryotes with Secondary Plastid of Red Algal Origin

(2012) Fabien Burki et al.   Genome Biology and Evolution

Reevaluating the Green Contribution to Diatom Genomes

(2012) Philippe Deschamps et al.   Genome Biology and Evolution

Symbiodinium Transcriptomes: Genome Insights into the Dinoflagellate Symbionts of Reef-Building Corals

(2012) Till Bayer et al.   PLoS One

Tertiary Endosymbiosis in Two Dinotoms Has Generated Little Change in the Mitochondrial Genomes of Their Dinoflagellate Hosts and Diatom Endosymbionts

(2012) Behzad Imanian et al.   PLoS One

Hyperdiversity of Genes Encoding Integral Light-Harvesting Proteins in the Dinoflagellate Symbiodinium sp

(2012) Lynda Boldt et al.   PLoS One

The search for the missing link: A relic plastid in Perkinsus?

(2011) José A. Fernández Robledo et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Alveolate Phylogeny Inferred using Concatenated Ribosomal Proteins

(2011) TSVETAN R. BACHVAROFF et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Isoprenoid biosynthesis in eukaryotic phototrophs: A spotlight on algae

(2011) Martin Lohr et al.   PLANT SCIENCE

Ultrastructure of Amoebophrya sp. and its Changes during the Course of Infection

(2011) John J. Miller et al.   PROTIST

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Dinoflagellate Genome Evolution

(2010) Jennifer H. Wisecaver et al.   Annual Review of Microbiology

Complex phylogenetic distribution of a non-canonical genetic code in green algae

(2010) Ellen Cocquyt et al.   BMC EVOLUTIONARY BIOLOGY

Transcriptome analysis reveals nuclear-encoded proteins for the maintenance of temporary plastids in the dinoflagellate Dinophysis acuminata

(2010) Jennifer H Wisecaver et al.   BMC GENOMICS

Origins and Early Evolution of the Mevalonate Pathway of Isoprenoid Biosynthesis in the Three Domains of Life

(2010) J. Lombard et al.   MOLECULAR BIOLOGY AND EVOLUTION

Antagonistic coevolution accelerates molecular evolution

(2010) Steve Paterson et al.   NATURE

The endosymbiotic origin, diversification and fate of plastids

(2010) P. J. Keeling   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The evolution, metabolism and functions of the apicoplast

(2010) L. Lim et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Biosynthesis of Plant Isoprenoids: Perspectives for Microbial Engineering

(2009) James Kirby et al.   Annual Review of Plant Biology

PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

(2009) Nicolas Lartillot et al.   BIOINFORMATICS

The Puzzle of Plastid Evolution

(2009) John M. Archibald   CURRENT BIOLOGY

Expressed Sequence Tags fromAmoebophryasp. InfectingKarlodinium veneficum: Comparing Host and Parasite Sequences

(2009) TSVETAN R. BACHVAROFF et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Chromalveolates and the Evolution of Plastids by Secondary Endosymbiosis

(2009) PATRICK J. KEELING   JOURNAL OF EUKARYOTIC MICROBIOLOGY

DINOFLAGELLATE HOST-PARASITE STEROL PROFILES DICTATE KARLOTOXIN SENSITIVITY

(2009) Allen R. Place et al.   JOURNAL OF PHYCOLOGY

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Chromalveolate plastids: direct descent or multiple endosymbioses?

(2009) Andrzej Bodył et al.   TRENDS IN ECOLOGY & EVOLUTION

Plastid Evolution

(2008) Sven B. Gould et al.   Annual Review of Plant Biology

A HYPOTHESIS FOR PLASTID EVOLUTION IN CHROMALVEOLATES1

(2008) M. Virginia Sanchez-Puerta et al.   JOURNAL OF PHYCOLOGY

PLASTID DYNAMICS DURING SURVIVAL OFDINOPHYSIS CAUDATAWITHOUT ITS CILIATE PREY1

(2008) Myung Gil Park et al.   JOURNAL OF PHYCOLOGY

Plastid-Derived Genes in the Nonphotosynthetic Alveolate Oxyrrhis marina

(2008) C. H. Slamovits et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Cryptic Algal Group Unveiled: A Plastid Biosynthesis Pathway in the Oyster Parasite Perkinsus marinus

(2008) M. Matsuzaki et al.   MOLECULAR BIOLOGY AND EVOLUTION

The origin of plastids

(2008) C.J Howe et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Terpenoid biomaterials

(2008) Jörg Bohlmann et al.   PLANT JOURNAL