A coarse-grained MARTINI-like force field for DNA unzipping in nanopores
Published 2015 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
A coarse-grained MARTINI-like force field for DNA unzipping in nanopores
Authors
Keywords
-
Journal
JOURNAL OF COMPUTATIONAL CHEMISTRY
Volume 36, Issue 13, Pages 947-956
Publisher
Wiley
Online
2015-02-23
DOI
10.1002/jcc.23874
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Coarse-Grained Model for Predicting RNA Folding Thermodynamics
- (2013) Natalia A. Denesyuk et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Single-Stranded DNA within Nanopores: Conformational Dynamics and Implications for Sequencing; a Molecular Dynamics Simulation Study
- (2012) Andrew T. Guy et al. BIOPHYSICAL JOURNAL
- Sequence-dependent thermodynamics of a coarse-grained DNA model
- (2012) Petr Šulc et al. JOURNAL OF CHEMICAL PHYSICS
- A comparison of the value of viscosity for several water models using Poiseuille flow in a nano-channel
- (2012) A. P. Markesteijn et al. JOURNAL OF CHEMICAL PHYSICS
- On developing coarse-grained models for biomolecular simulation: a review
- (2012) Sereina Riniker et al. PHYSICAL CHEMISTRY CHEMICAL PHYSICS
- Breathing, bubbling, and bending: DNA flexibility from multimicrosecond simulations
- (2012) Ari Zeida et al. PHYSICAL REVIEW E
- Recent successes in coarse-grained modeling of DNA
- (2012) Davit A. Potoyan et al. Wiley Interdisciplinary Reviews-Computational Molecular Science
- Coarse-Grained (Multiscale) Simulations in Studies of Biophysical and Chemical Systems
- (2011) Shina C.L. Kamerlin et al. Annual Review of Physical Chemistry
- Moving beyond Watson–Crick models of coarse grained DNA dynamics
- (2011) Margaret C. Linak et al. JOURNAL OF CHEMICAL PHYSICS
- Coarse-Grained Molecular Dynamics Simulation of DNA Translocation in Chemically Modified Nanopores
- (2011) Abhijit Ramachandran et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Nanopore sensors for nucleic acid analysis
- (2011) Bala Murali Venkatesan et al. Nature Nanotechnology
- Simulating water with rigid non-polarizable models: a general perspective
- (2011) Carlos Vega et al. PHYSICAL CHEMISTRY CHEMICAL PHYSICS
- Capturing the essence of folding and functions of biomolecules using coarse-grained models
- (2011) Changbong Hyeon et al. Nature Communications
- A systematically coarse-grained model for DNA and its predictions for persistence length, stacking, twist, and chirality
- (2010) Alex Morriss-Andrews et al. JOURNAL OF CHEMICAL PHYSICS
- A Coarse Grained Model for Atomic-Detailed DNA Simulations with Explicit Electrostatics
- (2010) Pablo D. Dans et al. Journal of Chemical Theory and Computation
- Another Coarse Grain Model for Aqueous Solvation: WAT FOUR?
- (2010) Leonardo Darré et al. Journal of Chemical Theory and Computation
- A Coarse-Grained Model of DNA with Explicit Solvation by Water and Ions
- (2010) Robert C. DeMille et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Polarizable Water Model for the Coarse-Grained MARTINI Force Field
- (2010) Semen O. Yesylevskyy et al. PLoS Computational Biology
- Microscopic Mechanics of Hairpin DNA Translocation through Synthetic Nanopores
- (2009) Jeffrey Comer et al. BIOPHYSICAL JOURNAL
- The persistence length of double stranded DNA determined using dark field tethered particle motion
- (2009) Sanneke Brinkers et al. JOURNAL OF CHEMICAL PHYSICS
- Stretching and twisting of the DNA duplexes in coarse-grained dynamical models
- (2009) Szymon Niewieczerzał et al. JOURNAL OF PHYSICS-CONDENSED MATTER
- 3D-DART: a DNA structure modelling server
- (2009) M. van Dijk et al. NUCLEIC ACIDS RESEARCH
- PRIMO/PRIMONA: A coarse-grained model for proteins and nucleic acids that preserves near-atomistic accuracy
- (2009) Srinivasa M. Gopal et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- What ice can teach us about water interactions: a critical comparison of the performance of different water models
- (2008) C. Vega et al. FARADAY DISCUSSIONS
- The multiscale coarse-graining method. I. A rigorous bridge between atomistic and coarse-grained models
- (2008) W. G. Noid et al. JOURNAL OF CHEMICAL PHYSICS
- Insights on protein-DNA recognition by coarse grain modelling
- (2008) P. Poulain et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
- DNA and lipid bilayers: self-assembly and insertion
- (2008) S. Khalid et al. Journal of the Royal Society Interface
- Stretching and unzipping nucleic acid hairpins using a synthetic nanopore
- (2008) Q. Zhao et al. NUCLEIC ACIDS RESEARCH
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search