Pteros 2.0: Evolution of the fast parallel molecular analysis library for C++ and python

Determination of the shape and curvature of nonplanar lipid bilayers that are bent in a single plane in molecular dynamics simulations

(2014) S. O. Yesylevskyy et al.   JOURNAL OF MOLECULAR MODELING

Determination of mean and Gaussian curvatures of highly curved asymmetric lipid bilayers: the case study of the influence of cholesterol on the membrane shape

(2014) S. O. Yesylevskyy et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Efficiency of the monofunctionalized C60fullerenes as membrane targeting agents studied by all-atom molecular dynamics simulations

(2013) Semen O. Yesylevskyy et al.   MOLECULAR MEMBRANE BIOLOGY

Cholesterol Induces Uneven Curvature of Asymmetric Lipid Bilayers

(2013) S. O. Yesylevskyy et al.   TheScientificWorldJOURNAL

How cholesterol is distributed between monolayers in asymmetric lipid membranes

(2012) Semen O. Yesylevskyy et al.   EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS

Pteros: Fast and easy to use open-source C++ library for molecular analysis

(2012) Semen O. Yesylevskyy   JOURNAL OF COMPUTATIONAL CHEMISTRY

ProDy: Protein Dynamics Inferred from Theory and Experiments

(2011) A. Bakan et al.   BIOINFORMATICS

MDAnalysis: A toolkit for the analysis of molecular dynamics simulations

(2011) Naveen Michaud-Agrawal et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility

(2009) Garrett M. Morris et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY