Polarizable Water Model for the Coarse-Grained MARTINI Force Field

Current Status of the AMOEBA Polarizable Force Field

(2010) Jay W. Ponder et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Membrane poration by antimicrobial peptides combining atomistic and coarse-grained descriptions

(2009) Andrzej J. Rzepiela et al.   FARADAY DISCUSSIONS

Martini Coarse-Grained Force Field: Extension to Carbohydrates

(2009) Cesar A. López et al.   Journal of Chemical Theory and Computation

Free Energy for the Permeation of Na+and Cl−Ions and Their Ion-Pair through a Zwitterionic Dimyristoyl Phosphatidylcholine Lipid Bilayer by Umbrella Integration with Harmonic Fourier Beads

(2009) Ilja V. Khavrutskii et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Multiscale simulations of protein landscapes: Using coarse-grained models as reference potentials to full explicit models

(2009) Benjamin M. Messer et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Coarse-Grained Simulations of the Membrane-Active Antimicrobial Peptide Maculatin 1.1

(2008) Peter J. Bond et al.   BIOPHYSICAL JOURNAL

Kinetics, Statistics, and Energetics of Lipid Membrane Electroporation Studied by Molecular Dynamics Simulations

(2008) Rainer A. Böckmann et al.   BIOPHYSICAL JOURNAL

Peptide Aggregation and Pore Formation in a Lipid Bilayer: A Combined Coarse-Grained and All Atom Molecular Dynamics Study

(2008) Lea Thøgersen et al.   BIOPHYSICAL JOURNAL

A polarizable coarse-grained water model for coarse-grained proteins simulations

(2008) Tap Ha-Duong et al.   CHEMICAL PHYSICS LETTERS

The MARTINI Coarse-Grained Force Field: Extension to Proteins

(2008) Luca Monticelli et al.   Journal of Chemical Theory and Computation

GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

(2008) Berk Hess et al.   Journal of Chemical Theory and Computation

Coarse-Grained Molecular Dynamics Studies of the Concentration and Size Dependence of Fifth- and Seventh-Generation PAMAM Dendrimers on Pore Formation in DMPC Bilayer

(2008) Hwankyu Lee et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Assessing Atomistic and Coarse-Grained Force Fields for Protein−Lipid Interactions: the Formidable Challenge of an Ionizable Side Chain in a Membrane

(2008) Igor Vorobyov et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Membrane Potential and Electrostatics of Phospholipid Bilayers with Asymmetric Transmembrane Distribution of Anionic Lipids

(2008) Andrey A. Gurtovenko et al.   JOURNAL OF PHYSICAL CHEMISTRY B

A Quantitative Coarse-Grain Model for Lipid Bilayers

(2007) Mario Orsi et al.   JOURNAL OF PHYSICAL CHEMISTRY B