Integration of transcription and flux data reveals molecular paths associated with differences in oxygen-dependent phenotypes of Saccharomyces cerevisiae

Vps9 Family Protein Muk1 Is the Second Rab5 Guanosine Nucleotide Exchange Factor in Budding Yeast

(2013) Andrew L. Paulsel et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Subnetwork-based analysis of chronic lymphocytic leukemia identifies pathways that associate with disease progression

(2012) H.-Y. Chuang et al.   BLOOD

Dynamic flux balance analysis of the metabolism ofSaccharomyces cerevisiaeduring the shift from fully respirative or respirofermentative metabolic states to anaerobiosis

(2012) Paula Jouhten et al.   FEBS Journal

Along signal paths: an empirical gene set approach exploiting pathway topology

(2012) Paolo Martini et al.   NUCLEIC ACIDS RESEARCH

Profiling of Cytosolic and Peroxisomal Acetyl-CoA Metabolism in Saccharomyces cerevisiae

(2012) Yun Chen et al.   PLoS One

From sets to graphs: towards a realistic enrichment analysis of transcriptomic systems

(2011) L. Geistlinger et al.   BIOINFORMATICS

Dual Function of Sdh3 in the Respiratory Chain and TIM22 Protein Translocase of the Mitochondrial Inner Membrane

(2011) Natalia Gebert et al.   MOLECULAR CELL

Identifying Causal Genes and Dysregulated Pathways in Complex Diseases

(2011) Yoo-Ah Kim et al.   PLoS Computational Biology

Reconstruction of the yeast protein-protein interaction network involved in nutrient sensing and global metabolic regulation

(2010) Subir K Nandy et al.   BMC Systems Biology

Further developments towards a genome-scale metabolic model of yeast

(2010) Paul D Dobson et al.   BMC Systems Biology

Network medicine: a network-based approach to human disease

(2010) Albert-László Barabási et al.   NATURE REVIEWS GENETICS

A Global Protein Kinase and Phosphatase Interaction Network in Yeast

(2010) A. Breitkreutz et al.   SCIENCE

A novel algorithm for detecting differentially regulated paths based on gene set enrichment analysis

(2009) Andreas Keller et al.   BIOINFORMATICS

Low oxygen levels as a trigger for enhancement of respiratory metabolism in Saccharomyces cerevisiae

(2009) Eija Rintala et al.   BMC GENOMICS

Linking high-resolution metabolic flux phenotypes and transcriptional regulation in yeast modulated by the global regulator Gcn4p

(2009) J. F. Moxley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Oxygen dependence of metabolic fluxes and energy generation of Saccharomyces cerevisiae CEN.PK113-1A

(2008) Paula Jouhten et al.   BMC Systems Biology

A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology

(2008) Markus J Herrgård et al.   NATURE BIOTECHNOLOGY

High-Quality Binary Protein Interaction Map of the Yeast Interactome Network

(2008) H. Yu et al.   SCIENCE

Central carbon metabolism ofSaccharomyces cerevisiaein anaerobic, oxygen-limited and fully aerobic steady-state conditions and following a shift to anaerobic conditions

(2007) Marilyn G. Wiebe et al.   FEMS YEAST RESEARCH