Dynamic flux balance analysis of the metabolism ofSaccharomyces cerevisiaeduring the shift from fully respirative or respirofermentative metabolic states to anaerobiosis

Deletion or Overexpression of Mitochondrial NAD+Carriers inSaccharomyces cerevisiaeAlters Cellular NAD and ATP Contents and Affects Mitochondrial Metabolism and the Rate of Glycolysis

(2011) Gennaro Agrimi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

How yeast re-programmes its transcriptional profile in response to different nutrient impulses

(2011) Duygu Dikicioglu et al.   BMC Systems Biology

Transcriptional Responses of Saccharomyces cerevisiae to Shift from Respiratory and Respirofermentative to Fully Fermentative Metabolism

(2011) Eija Rintala et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Genome-Scale Consequences of Cofactor Balancing in Engineered Pentose Utilization Pathways in Saccharomyces cerevisiae

(2011) Amit Ghosh et al.   PLoS One

Nutrient control of eukaryote cell growth: a systems biology study in yeast

(2010) Alex Gutteridge et al.   BMC BIOLOGY

Further developments towards a genome-scale metabolic model of yeast

(2010) Paul D Dobson et al.   BMC Systems Biology

Proton-Coupled Electron Transfer in Cytochrome Oxidase

(2010) Ville R. I. Kaila et al.   CHEMICAL REVIEWS

Coupling of proton and substrate translocation in the transport cycle of mitochondrial carriers

(2010) Edmund RS Kunji et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Metabolic and Transcriptional Response to Cofactor Perturbations in Escherichia coli

(2010) Anders K. Holm et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Bacterial adaptation through distributed sensing of metabolic fluxes

(2010) Oliver Kotte et al.   Molecular Systems Biology

Low oxygen levels as a trigger for enhancement of respiratory metabolism in Saccharomyces cerevisiae

(2009) Eija Rintala et al.   BMC GENOMICS

Steady-state and dynamic flux balance analysis of ethanol production by Saccharomyces cerevisiae

(2009) J.L. Hjersted et al.   IET Systems Biology

Application of dynamic flux balance analysis to an industrial Escherichia coli fermentation

(2009) Adam L. Meadows et al.   METABOLIC ENGINEERING

Glucose regulates transcription in yeast through a network of signaling pathways

(2009) Shadia Zaman et al.   Molecular Systems Biology

Dynamics of Glycolytic Regulation during Adaptation of Saccharomyces cerevisiae to Fermentative Metabolism

(2008) J. van den Brink et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Determination of the cytosolic free NAD/NADH ratio inSaccharomyces cerevisiaeunder steady-state and highly dynamic conditions

(2008) André B. Canelas et al.   BIOTECHNOLOGY AND BIOENGINEERING

Transcription factor control of growth rate dependent genes in Saccharomyces cerevisiae: A three factor design

(2008) Alessandro Fazio et al.   BMC GENOMICS

New insights into the Saccharomyces cerevisiae fermentation switch: dynamic transcriptional response to anaerobicity and glucose-excess

(2008) Joost van den Brink et al.   BMC GENOMICS

Oxygen dependence of metabolic fluxes and energy generation of Saccharomyces cerevisiae CEN.PK113-1A

(2008) Paula Jouhten et al.   BMC Systems Biology

A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology

(2008) Markus J Herrgård et al.   NATURE BIOTECHNOLOGY

Central carbon metabolism ofSaccharomyces cerevisiaein anaerobic, oxygen-limited and fully aerobic steady-state conditions and following a shift to anaerobic conditions

(2007) Marilyn G. Wiebe et al.   FEMS YEAST RESEARCH

Coordination of Growth Rate, Cell Cycle, Stress Response, and Metabolic Activity in Yeast

(2007) Matthew J. Brauer et al.   MOLECULAR BIOLOGY OF THE CELL