Transcriptome analysis of ripe and unripe fruit tissue of banana identifies major metabolic networks involved in fruit ripening process

Expansion of banana (Musa acuminata) gene families involved in ethylene biosynthesis and signalling after lineage-specific whole-genome duplications

(2014) Cyril Jourda et al.   NEW PHYTOLOGIST

Genome-Wide Analysis of Alternative Splicing in Zea mays: Landscape and Genetic Regulation

(2014) S. R. Thatcher et al.   PLANT CELL

Genome-wide identification and expression analysis of the mitogen-activated protein kinase gene family from banana suggest involvement of specific members in different stages of fruit ripening

(2013) Mehar Hasan Asif et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Expression of xyloglucan endotransglucosylase/hydrolase (XTH) genes and XET activity in ethylene treated apple and tomato fruits

(2013) J. Muñoz-Bertomeu et al.   JOURNAL OF PLANT PHYSIOLOGY

PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors

(2013) Jinpu Jin et al.   NUCLEIC ACIDS RESEARCH

Comparative Transcriptome Analysis Using High Papaverine Mutant of Papaver somniferum Reveals Pathway and Uncharacterized Steps of Papaverine Biosynthesis

(2013) Sumya Pathak et al.   PLoS One

Correction: Role of an Iron-Dependent Transcriptional Regulator in the Pathogenesis and Host Response to Infection with Streptococcus pneumoniae

(2013) Radha Gupta et al.   PLoS One

The Banana Genome Hub

(2013) Gaëtan Droc et al.   Database-The Journal of Biological Databases and Curation

Increasing the source/sink ratio in Vitis vinifera (cv Sangiovese) induces extensive transcriptome reprogramming and modifies berry ripening

(2012) Chiara Pastore et al.   BMC GENOMICS

Transcriptome changes during fruit development and ripening of sweet orange (Citrus sinensis)

(2012) Keqin Yu et al.   BMC GENOMICS

Transcriptomic analysis of Chinese bayberry (Myrica rubra) fruit development and ripening using RNA-Seq

(2012) Chao Feng et al.   BMC GENOMICS

Transcriptome sequencing for SNP discovery across Cucumis melo

(2012) José Blanca et al.   BMC GENOMICS

Generation and analysis of blueberry transcriptome sequences from leaves, developing fruit, and flower buds from cold acclimation through deacclimation

(2012) Lisa J Rowland et al.   BMC PLANT BIOLOGY

Comparative transcriptomics and proteomics analysis of citrus fruit, to improve understanding of the effect of low temperature on maintaining fruit quality during lengthy post-harvest storage

(2012) Ze Yun et al.   JOURNAL OF EXPERIMENTAL BOTANY

The Citrus ABA signalosome: identification and transcriptional regulation during sweet orange fruit ripening and leaf dehydration

(2012) Paco Romero et al.   JOURNAL OF EXPERIMENTAL BOTANY

The banana (Musa acuminata) genome and the evolution of monocotyledonous plants

(2012) Angélique D’Hont et al.   NATURE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Transcriptome Profiling of Citrus Fruit Response to Huanglongbing Disease

(2012) Federico Martinelli et al.   PLoS One

Genetics and Control of Tomato Fruit Ripening and Quality Attributes

(2011) Harry J. Klee et al.   Annual Review of Genetics

Analysis of the melon (Cucumis melo) small RNAome by high-throughput pyrosequencing

(2011) Daniel Gonzalez-Ibeas et al.   BMC GENOMICS

Characterization of transcriptome dynamics during watermelon fruit development: sequencing, assembly, annotation and gene expression profiles

(2011) Shaogui Guo et al.   BMC GENOMICS

Transcriptional analysis of late ripening stages of grapevine berry

(2011) Sabine Guillaumie et al.   BMC PLANT BIOLOGY

Fruit development of the diploid kiwifruit, Actinidia chinensis 'Hort16A'

(2011) Annette C Richardson et al.   BMC PLANT BIOLOGY

Differential expression and alternative splicing of rice sulphate transporter family members regulate sulphur status during plant growth, development and stress conditions

(2011) Smita Kumar et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Combined transcriptome, genetic diversity and metabolite profiling in tomato fruit reveals that the ethylene response factor SlERF6 plays an important role in ripening and carotenoid accumulation

(2011) Je Min Lee et al.   PLANT JOURNAL

The Tomato MADS-Box Transcription Factor RIPENING INHIBITOR Interacts with Promoters Involved in Numerous Ripening Processes in a COLORLESS NONRIPENING-Dependent Manner

(2011) C. Martel et al.   PLANT PHYSIOLOGY

The regulation of MADS-box gene expression during ripening of banana and their regulatory interaction with ethylene

(2010) Tomer Elitzur et al.   JOURNAL OF EXPERIMENTAL BOTANY

Expression of genes associated with ethylene-signalling pathway in harvested banana fruit in response to temperature and 1-MCP treatment

(2010) Su-cheng Yan et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

Molecular characterization and differential expression of β-1,3-glucanase during ripening in banana fruit in response to ethylene, auxin, ABA, wounding, cold and light–dark cycles

(2010) Swarup Roy Choudhury et al.   PLANT CELL REPORTS

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Ripening of fleshy fruit: Molecular insight and the role of ethylene

(2009) Vishwas A. Bapat et al.   BIOTECHNOLOGY ADVANCES

Effect of low oxygen, temperature and 1-methylcyclopropene on the expression of genes regulating ethylene biosynthesis and perception during ripening in apple

(2008) M.H. Asif et al.   SOUTH AFRICAN JOURNAL OF BOTANY