Expansion of banana (Musa acuminata) gene families involved in ethylene biosynthesis and signalling after lineage-specific whole-genome duplications

A genome-wide analysis of the ERF gene family in sorghum

(2013) H.W. Yan et al.   GENETICS AND MOLECULAR RESEARCH

Banana ethylene response factors are involved in fruit ripening through their interactions with ethylene biosynthesis genes

(2013) Yun-yi Xiao et al.   JOURNAL OF EXPERIMENTAL BOTANY

Molecular characterization of two banana ethylene signaling component MaEBFs during fruit ripening

(2013) Jian-fei Kuang et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY

The Banana Genome Hub

(2013) Gaëtan Droc et al.   Database-The Journal of Biological Databases and Curation

Mechanisms of signal transduction by ethylene: overlapping and non-overlapping signalling roles in a receptor family

(2013) S. N. Shakeel et al.   AoB Plants

Genome and gene duplications and gene expression divergence: a view from plants

(2012) Yupeng Wang et al.   Annals of the New York Academy of Sciences

Activation of ethylene signaling is mediated by nuclear translocation of the cleaved EIN2 carboxyl terminus

(2012) Xing Wen et al.   CELL RESEARCH

The banana (Musa acuminata) genome and the evolution of monocotyledonous plants

(2012) Angélique D’Hont et al.   NATURE

The tomato genome sequence provides insights into fleshy fruit evolution

(2012)   NATURE

Ethylene in vegetative development: a tale with a riddle

(2012) Filip Vandenbussche et al.   NEW PHYTOLOGIST

PGDD: a database of gene and genome duplication in plants

(2012) Tae-Ho Lee et al.   NUCLEIC ACIDS RESEARCH

Preferential Retention of Circadian Clock Genes during Diploidization following Whole Genome Triplication inBrassica rapa

(2012) Ping Lou et al.   PLANT CELL

The fate of duplicated genes in a polyploid plant genome

(2012) Anne Roulin et al.   PLANT JOURNAL

Expression profiles of a MhCTR1 gene in relation to banana fruit ripening

(2012) Huei-Lin Hu et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Processing and Subcellular Trafficking of ER-Tethered EIN2 Control Response to Ethylene Gas

(2012) H. Qiao et al.   SCIENCE

Auxin and ethylene: collaborators or competitors?

(2012) Gloria K. Muday et al.   TRENDS IN PLANT SCIENCE

A genome triplication associated with early diversification of the core eudicots

(2012) Yuannian Jiao et al.   GENOME BIOLOGY

Screening synteny blocks in pairwise genome comparisons through integer programming

(2011) Haibao Tang et al.   BMC BIOINFORMATICS

Genomic and transcriptomic analysis of the AP2/ERF superfamily in Vitis vinifera

(2011) Francesco Licausi et al.   BMC GENOMICS

Contrasting patterns of evolution following whole genome versus tandem duplication events in Populus

(2011) E. Rodgers-Melnick et al.   GENOME RESEARCH

Paradigms and Paradox in the Ethylene Signaling Pathway and Interaction Network

(2011) Qiong Zhao et al.   Molecular Plant

Different Gene Families in Arabidopsis thaliana Transposed in Different Epochs and at Different Frequencies throughout the Rosids

(2011) M. R. Woodhouse et al.   PLANT CELL

Comparative Evolution of Photosynthetic Genes in Response to Polyploid and Nonpolyploid Duplication

(2011) J. E. Coate et al.   PLANT PHYSIOLOGY

Validation of reference genes for RT-qPCR studies of gene expression in banana fruit under different experimental conditions

(2011) Lei Chen et al.   PLANTA

Modes of Gene Duplication Contribute Differently to Genetic Novelty and Redundancy, but Show Parallels across Divergent Angiosperms

(2011) Yupeng Wang et al.   PLoS One

Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss

(2011) J. C. Schnable et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Protein?Protein and Protein?DNA Dosage Balance and Differential Paralog Transcription Factor Retention in Polyploids

(2011) James A. Birchler et al.   Frontiers in Plant Science

Dose–Sensitivity, Conserved Non-Coding Sequences, and Duplicate Gene Retention Through Multiple Tetraploidies in the Grasses

(2011) James C. Schnable et al.   Frontiers in Plant Science

The Copper Transporter RAN1 Is Essential for Biogenesis of Ethylene Receptors inArabidopsis

(2010) Brad M. Binder et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Expression of genes associated with ethylene-signalling pathway in harvested banana fruit in response to temperature and 1-MCP treatment

(2010) Su-cheng Yan et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

Identification, phylogeny, and transcript profiling of ERF family genes during development and abiotic stress treatments in tomato

(2010) Manoj K. Sharma et al.   MOLECULAR GENETICS AND GENOMICS

GreenPhylDB v2.0: comparative and functional genomics in plants

(2010) Mathieu Rouard et al.   NUCLEIC ACIDS RESEARCH

Ethylene-Induced Stabilization of ETHYLENE INSENSITIVE3 and EIN3-LIKE1 Is Mediated by Proteasomal Degradation of EIN3 Binding F-Box 1 and 2 That Requires EIN2 in Arabidopsis

(2010) F. An et al.   PLANT CELL

Discovery, phylogeny and expression patterns of AP2-like genes in maize

(2010) Jing Zhuang et al.   PLANT GROWTH REGULATION

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Bias in Plant Gene Content Following Different Sorts of Duplication: Tandem, Whole-Genome, Segmental, or by Transposition

(2009) Michael Freeling   Annual Review of Plant Biology

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Silencing Sl-EBF1 and Sl-EBF2 expression causes constitutive ethylene response phenotype, accelerated plant senescence, and fruit ripening in tomato

(2009) Y. Yang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Transcriptional Regulation of the Ethylene Response Factor LeERF2 in the Expression of Ethylene Biosynthesis Genes Controls Ethylene Production in Tomato and Tobacco

(2009) Z. Zhang et al.   PLANT PHYSIOLOGY

Angiosperm genome comparisons reveal early polyploidy in the monocot lineage

(2009) H. Tang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE

Towards the understanding of the cocoa transcriptome: Production and analysis of an exhaustive dataset of ESTs of Theobroma cacao L. generated from various tissues and under various conditions

(2008) Xavier Argout et al.   BMC GENOMICS

Recent developments in the MAFFT multiple sequence alignment program

(2008) K. Katoh et al.   BRIEFINGS IN BIOINFORMATICS

A prominent role for segmental duplications in modeling Eukaryotic genomes

(2008) Romain Koszul et al.   COMPTES RENDUS BIOLOGIES

Characterization of transcriptional profiles of MA-ACS1 and MA-ACO1 genes in response to ethylene, auxin, wounding, cold and different photoperiods during ripening in banana fruit

(2008) Swarup Roy Choudhury et al.   JOURNAL OF PLANT PHYSIOLOGY

An Improved General Amino Acid Replacement Matrix

(2008) S. Q. Le et al.   MOLECULAR BIOLOGY AND EVOLUTION

OryGenesDB 2008 update: database interoperability for functional genomics of rice

(2008) G. Droc et al.   NUCLEIC ACIDS RESEARCH

EIN3-like gene expression during fruit ripening of Cavendish banana (Musa acuminata cv. Grande naine)

(2008) Didier Mbéguié-A-Mbéguié et al.   PHYSIOLOGIA PLANTARUM

Identification and Characterization of Shared Duplications between Rice and Wheat Provide New Insight into Grass Genome Evolution

(2008) J. Salse et al.   PLANT CELL

Ethylene signaling in Arabidopsis involves feedback regulation via the elaborate control ofEBF2expression by EIN3

(2008) Mineko Konishi et al.   PLANT JOURNAL

Involvement ofRTE1in conformational changes promoting ETR1 ethylene receptor signaling in Arabidopsis

(2008) Josephine S. Resnick et al.   PLANT JOURNAL