Analysis of the melon (Cucumis melo) small RNAome by high-throughput pyrosequencing

Analysis of expressed sequence tags generated from full-length enriched cDNA libraries of melon

(2011) Christian Clepet et al.   BMC GENOMICS

Deep sequencing discovery of novel and conserved microRNAs in trifoliate orange (Citrus trifoliata)

(2010) Changnian Song et al.   BMC GENOMICS

Sequencing of 6.7 Mb of the melon genome using a BAC pooling strategy

(2010) Víctor M González et al.   BMC PLANT BIOLOGY

Plant virus-mediated induction of miR168 is associated with repression of ARGONAUTE1 accumulation

(2010) Éva Várallyay et al.   EMBO JOURNAL

Virus-derived small interfering RNAs at the core of plant–virus interactions

(2010) César Llave   TRENDS IN PLANT SCIENCE

An oligo-based microarray offers novel transcriptomic approaches for the analysis of pathogen resistance and fruit quality traits in melon (Cucumis melo L.)

(2009) Albert Mascarell-Creus et al.   BMC GENOMICS

The DAWGPAWS pipeline for the annotation of genes and transposable elements in plant genomes

(2009) James C Estill et al.   Plant Methods

Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress

(2009) Catalina Arenas-Huertero et al.   PLANT MOLECULAR BIOLOGY

Deep-sequencing of plant viral small RNAs reveals effective and widespread targeting of viral genomes

(2009) Livia Donaire et al.   VIROLOGY

Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa

(2008) R. D. Morin et al.   GENOME RESEARCH

Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening

(2008) S. Moxon et al.   GENOME RESEARCH

Global identification of microRNA–target RNA pairs by parallel analysis of RNA ends

(2008) Marcelo A German et al.   NATURE BIOTECHNOLOGY

tRNAdb 2009: compilation of tRNA sequences and tRNA genes

(2008) F. Juhling et al.   NUCLEIC ACIDS RESEARCH

Rfam: updates to the RNA families database

(2008) P. P. Gardner et al.   NUCLEIC ACIDS RESEARCH

Criteria for Annotation of Plant MicroRNAs

(2008) B. C. Meyers et al.   PLANT CELL

Mechanism of plant eIF4E-mediated resistance against a Carmovirus (Tombusviridae): cap-independent translation of a viral RNA controlledin cisby an (a)virulence determinant

(2008) Verónica Truniger et al.   PLANT JOURNAL

Inferring MicroRNA Activities by Combining Gene Expression with MicroRNA Target Prediction

(2008) Chao Cheng et al.   PLoS One

Conifers have a unique small RNA silencing signature

(2008) E. V. Dolgosheina et al.   RNA