Western white pine SNP discovery and high-throughput genotyping for breeding and conservation applications
Published 2014 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Western white pine SNP discovery and high-throughput genotyping for breeding and conservation applications
Authors
Keywords
Five-needle pine, Genotyping array, Linkage disequilibrium, Marker-based selection, Pedigree reconstruction
Journal
BMC PLANT BIOLOGY
Volume 14, Issue 1, Pages -
Publisher
Springer Nature
Online
2014-12-30
DOI
10.1186/s12870-014-0380-6
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- First insights into the transcriptome and development of new genomic tools of a widespread circum-Mediterranean tree species,Pinus halepensisMill
- (2014) S. Pinosio et al. Molecular Ecology Resources
- Association of Autoimmune Addison's Disease with Alleles of STAT4 and GATA3 in European Cohorts
- (2014) Anna L. Mitchell et al. PLoS One
- Transcriptome analysis of Pinus monticola primary needles by RNA-seq provides novel insight into host resistance to Cronartium ribicola
- (2013) Jun-Jun Liu et al. BMC GENOMICS
- A SNP resource for Douglas-fir: de novo transcriptome assembly and SNP detection and validation
- (2013) Glenn T Howe et al. BMC GENOMICS
- Effects of introgression on the genetic population structure of two ecologically and economically important conifer species: lodgepole pine (Pinus contorta var. latifolia) and jack pine (Pinus banksiana)
- (2013) Catherine I. Cullingham et al. GENOME
- SNP development from RNA-seq data in a nonmodel fish: how many individuals are needed for accurate allele frequency prediction?
- (2013) C. Schunter et al. Molecular Ecology Resources
- Principles of transcriptome analysis and gene expression quantification: an RNA-seq tutorial
- (2013) Jochen B. W. Wolf Molecular Ecology Resources
- Development of Strategies for SNP Detection in RNA-Seq Data: Application to Lymphoblastoid Cell Lines and Evaluation Using 1000 Genomes Data
- (2013) Emma M. Quinn et al. PLoS One
- Association of Cytokine and Toll-Like Receptor Gene Polymorphisms with Severe Malaria in Three Regions of Cameroon
- (2013) Tobias O. Apinjoh et al. PLoS One
- Biogeography of the ecosystems of the healthy human body
- (2013) Yanjiao Zhou et al. GENOME BIOLOGY
- GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research--an update
- (2012) R. Peakall et al. BIOINFORMATICS
- Association mapping in forest trees and fruit crops
- (2012) M. A. Khan et al. JOURNAL OF EXPERIMENTAL BOTANY
- Relative accuracy of three common methods of parentage analysis in natural populations
- (2012) Hugo B. Harrison et al. MOLECULAR ECOLOGY
- High-throughput and parallel SNP discovery in selected candidate genes inEucalyptus camaldulensisusing Illumina NGS platform
- (2012) Prasad S. Hendre et al. PLANT BIOTECHNOLOGY JOURNAL
- Identification and characterization of candidateRlm4blackleg resistance genes inBrassica napususing next-generation sequencing
- (2012) Reece Tollenaere et al. PLANT BIOTECHNOLOGY JOURNAL
- Anti-microbial peptide (AMP): nucleotide variation, gene expression, and host resistance in the white pine blister rust (WPBR) pathosystem
- (2012) Jun-Jun Liu et al. PLANTA
- RNA-Seq Identifies SNP Markers for Growth Traits in Rainbow Trout
- (2012) Mohamed Salem et al. PLoS One
- Accounting for competition in genetic analysis, with particular emphasis on forest genetic trials
- (2012) João Costa e Silva et al. Tree Genetics & Genomes
- Pinus monticola pathogenesis-related gene PmPR10-2 alleles as defense candidates for stem quantitative disease resistance against white pine blister rust (Cronartium ribicola)
- (2012) Jun-Jun Liu et al. Tree Genetics & Genomes
- Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent cell wall composition in stems
- (2011) S Samuel Yang et al. BMC GENOMICS
- Multiplexed shotgun genotyping for rapid and efficient genetic mapping
- (2011) P. Andolfatto et al. GENOME RESEARCH
- Ectopic expression of a truncated Pinus radiata AGAMOUS homolog (PrAG1) causes alteration of inflorescence architecture and male sterility in Nicotiana tabacum
- (2011) Jun-Jun Liu MOLECULAR BREEDING
- Association of a NovelPinus monticolaChitinase Gene (PmCh4B) with Quantitative Resistance toCronartium ribicola
- (2011) Jun-Jun Liu et al. PHYTOPATHOLOGY
- Discovery of polymorphisms in starch-related genes in rice germplasm by amplification of pooled DNA and deeply parallel sequencing†
- (2011) Ardashir Kharabian-Masouleh et al. PLANT BIOTECHNOLOGY JOURNAL
- A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species
- (2011) Robert J. Elshire et al. PLoS One
- Fast-forward genetics enabled by new sequencing technologies
- (2011) Korbinian Schneeberger et al. TRENDS IN PLANT SCIENCE
- Modeling Effects of Climate Change and Fire Management on Western White Pine (Pinus monticola) in the Northern Rocky Mountains, USA
- (2011) Rachel A. Loehman et al. Forests
- Current and future molecular approaches to investigate the white pine blister rust pathosystem
- (2010) B. A. Richardson et al. FOREST PATHOLOGY
- Blister rust and western forest biodiversity: ecology, values and outlook for white pines
- (2010) D. F. Tomback et al. FOREST PATHOLOGY
- In Vitro vs In Silico Detected SNPs for the Development of a Genotyping Array: What Can We Learn from a Non-Model Species?
- (2010) Camille Lepoittevin et al. PLoS One
- Genetic diversity and structure of western white pine (Pinus monticola) in North America: a baseline study for conservation, restoration, and addressing impacts of climate change
- (2010) Mee-Sook Kim et al. Tree Genetics & Genomes
- Comparative SNP diversity among four Eucalyptus species for genes from secondary metabolite biosynthetic pathways
- (2009) Carsten Külheim et al. BMC GENOMICS
- Breeding without breeding
- (2009) YOUSRY A. El-KASSABY et al. Genetics Research
- Congruent Climate‐Related Genecological Responses from Molecular Markers and Quantitative Traits for Western White Pine (Pinus monticola)
- (2009) Bryce A. Richardson et al. INTERNATIONAL JOURNAL OF PLANT SCIENCES
- Genealogical Relationship among Members of Selection and Production Populations of Yellow Cedar (Callitropsis nootkatensis [D. Don] Oerst.) in the Absence of Parental Information
- (2009) N. Massah et al. JOURNAL OF HEREDITY
- COLONY: a program for parentage and sibship inference from multilocus genotype data
- (2009) OWEN R. JONES et al. Molecular Ecology Resources
- Targeted single nucleotide polymorphism (SNP) discovery in a highly polyploid plant species using 454 sequencing
- (2009) Peter C. Bundock et al. PLANT BIOTECHNOLOGY JOURNAL
- Enhancing genetic mapping of complex genomes through the design of highly-multiplexed SNP arrays: application to the large and unsequenced genomes of white spruce and black spruce
- (2008) Nathalie Pavy et al. BMC GENOMICS
- Population, quantitative and comparative genomics of adaptation in forest trees
- (2008) David B Neale et al. CURRENT OPINION IN PLANT BIOLOGY
- RNA-Seq: a revolutionary tool for transcriptomics
- (2008) Zhong Wang et al. NATURE REVIEWS GENETICS
- Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers
- (2008) Nathan A. Baird et al. PLoS One
- Development of leucine-rich repeat polymorphism, amplified fragment length polymorphism, and sequence characterized amplified region markers to the Cronartium ribicola resistance gene Cr2 in western white pine (Pinus monticola)
- (2008) Jun-Jun Liu et al. Tree Genetics & Genomes
- High-throughput genotyping and mapping of single nucleotide polymorphisms in loblolly pine (Pinus taeda L.)
- (2008) Andrew J. Eckert et al. Tree Genetics & Genomes
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started