CircMarker: a fast and accurate algorithm for circular RNA detection
Published 2018 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
CircMarker: a fast and accurate algorithm for circular RNA detection
Authors
Keywords
Circular RNA, High-throughput sequencing, Genomics, RNA-Seq
Journal
BMC GENOMICS
Volume 19, Issue S6, Pages 175-183
Publisher
Springer Nature America, Inc
Online
2018-08-13
DOI
10.1186/s12864-018-4926-0
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- A comprehensive overview and evaluation of circular RNA detection tools
- (2017) Xiangxiang Zeng et al. PLoS Computational Biology
- Detecting circular RNAs: bioinformatic and experimental challenges
- (2016) Linda Szabo et al. NATURE REVIEWS GENETICS
- Comprehensive identification of internal structure and alternative splicing events in circular RNAs
- (2016) Yuan Gao et al. Nature Communications
- CIRI: an efficient and unbiased algorithm for de novo circular RNA identification
- (2015) Yuan Gao et al. GENOME BIOLOGY
- Complementary Sequence-Mediated Exon Circularization
- (2014) Xiao-Ou Zhang et al. CELL
- Detecting and characterizing circular RNAs
- (2014) William R Jeck et al. NATURE BIOTECHNOLOGY
- circBase: a database for circular RNAs
- (2014) Petar Glažar et al. RNA
- Genome-wide Analysis of Drosophila Circular RNAs Reveals Their Structural and Sequence Properties and Age-Dependent Neural Accumulation
- (2014) Jakub O. Westholm et al. Cell Reports
- Natural RNA circles function as efficient microRNA sponges
- (2013) Thomas B. Hansen et al. NATURE
- Circular RNAs are a large class of animal RNAs with regulatory potency
- (2013) Sebastian Memczak et al. NATURE
- A novel bocavirus in canine liver
- (2013) Linlin Li et al. Virology Journal
- Circ2Traits: a comprehensive database for circular RNA potentially associated with disease and traits
- (2013) Suman Ghosal et al. Frontiers in Genetics
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Circular RNAs Are the Predominant Transcript Isoform from Hundreds of Human Genes in Diverse Cell Types
- (2012) Julia Salzman et al. PLoS One
- Circular RNAs are abundant, conserved, and associated with ALU repeats
- (2012) W. R. Jeck et al. RNA
- TopHat-Fusion: an algorithm for discovery of novel fusion transcripts
- (2011) Daehwan Kim et al. GENOME BIOLOGY
- RNA sequencing: advances, challenges and opportunities
- (2010) Fatih Ozsolak et al. NATURE REVIEWS GENETICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now