Construction and verification of the transcriptional regulatory response network of Streptococcus mutans upon treatment with the biofilm inhibitor carolacton

Genomic Reconstruction of the Transcriptional Regulatory Network in Bacillus subtilis

(2013) S. A. Leyn et al.   JOURNAL OF BACTERIOLOGY

Characterization of a Streptococcus mutans Intergenic Region Containing a Small Toxic Peptide and Its cis-Encoded Antisense Small RNA Antitoxin

(2013) Stephanie Koyanagi et al.   PLoS One

CpsY Influences Streptococcus iniae Cell Wall Adaptations Important for Neutrophil Intracellular Survival

(2012) Jonathan P. Allen et al.   INFECTION AND IMMUNITY

Regulation of Bacteriocin Production and Cell Death by the VicRK Signaling System in Streptococcus mutans

(2012) D. B. Senadheera et al.   JOURNAL OF BACTERIOLOGY

Cell Death of Streptococcus mutans Induced by a Quorum-Sensing Peptide Occurs via a Conserved Streptococcal Autolysin

(2012) D. Dufour et al.   JOURNAL OF BACTERIOLOGY

One if by land, two if by sea: signalling to the ranks with CSP and XIP

(2012) Michael J. Federle et al.   MOLECULAR MICROBIOLOGY

Reverse engineering and analysis of large genome-scale gene networks

(2012) Maneesha Aluru et al.   NUCLEIC ACIDS RESEARCH

Control of cell division in Streptococcus pneumoniae by the conserved Ser/Thr protein kinase StkP

(2012) K. Beilharz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities

(2011) Yao Fu et al.   BMC BIOINFORMATICS

PATRIC: the Comprehensive Bacterial Bioinformatics Resource with a Focus on Human Pathogenic Species

(2011) Joseph J. Gillespie et al.   INFECTION AND IMMUNITY

The Biofilm Inhibitor Carolacton Disturbs Membrane Integrity and Cell Division of Streptococcus mutans through the Serine/Threonine Protein Kinase PknB

(2011) M. Reck et al.   JOURNAL OF BACTERIOLOGY

Subpopulation-Specific Transcriptome Analysis of Competence-Stimulating-Peptide-Induced Streptococcus mutans

(2011) A. Lemme et al.   JOURNAL OF BACTERIOLOGY

Regulation of Transcription by SMU.1349, a TetR Family Regulator, in Streptococcus mutans

(2011) P. Chattoraj et al.   JOURNAL OF BACTERIOLOGY

Differential response of Streptococcus mutans towards friend and foe in mixed-species cultures

(2011) J. Liu et al.   MICROBIOLOGY-SGM

Rgg proteins associated with internalized small hydrophobic peptides: a new quorum-sensing mechanism in streptococci

(2011) B. Fleuchot et al.   MOLECULAR MICROBIOLOGY

Bacterial transcriptomics: what is beyond the RNA horiz-ome?

(2011) Marc Güell et al.   NATURE REVIEWS MICROBIOLOGY

Theoretical and empirical quality assessment of transcription factor-binding motifs

(2011) Alejandra Medina-Rivera et al.   NUCLEIC ACIDS RESEARCH

Genetic Analysis of the Functions and Interactions of Components of the LevQRST Signal Transduction Complex of Streptococcus mutans

(2011) Lin Zeng et al.   PLoS One

A Differential Network Approach to Exploring Differences between Biological States: An Application to Prediabetes

(2011) Beatriz Valcárcel et al.   PLoS One

Honing the message: post-transcriptional and post-translational control in attaching and effacing pathogens

(2011) Shantanu Bhatt et al.   TRENDS IN MICROBIOLOGY

Evolution of Multidrug Resistance during Staphylococcus aureus Infection Involves Mutation of the Essential Two Component Regulator WalKR

(2011) Benjamin P. Howden et al.   PLoS Pathogens

The BceABRS Four-Component System Regulates the Bacitracin-Induced Cell Envelope Stress Response in Streptococcus mutans

(2010) J. Ouyang et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Role of GlnR in Acid-Mediated Repression of Genes Encoding Proteins Involved in Glutamine and Glutamate Metabolism in Streptococcus mutans

(2010) P. M. Chen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Transcriptomic and Phenotypic Analyses Identify Coregulated, Overlapping Regulons among PrfA, CtsR, HrcA, and the Alternative Sigma Factors σB, σC, σH, and σLinListeria monocytogenes

(2010) Soraya Chaturongakul et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach

(2010) Marc Bailly-Bechet et al.   BMC BIOINFORMATICS

Genome-wide inference of regulatory networks in Streptomyces coelicolor

(2010) Marlene Castro-Melchor et al.   BMC GENOMICS

Damage of Streptococcus mutans biofilms by carolacton, a secondary metabolite from the myxobacterium Sorangium cellulosum

(2010) Brigitte Kunze et al.   BMC MICROBIOLOGY

Acid tolerance mechanisms utilized byStreptococcus mutans

(2010) Robert Matsui et al.   Future Microbiology

Downregulation of GbpB, a Component of the VicRK Regulon, Affects Biofilm Formation and Cell Surface Characteristics ofStreptococcus mutans

(2010) Cristiane Duque et al.   INFECTION AND IMMUNITY

The Streptococcus mutans Serine/Threonine Kinase, PknB, Regulates Competence Development, Bacteriocin Production, and Cell Wall Metabolism

(2010) L. D. Banu et al.   INFECTION AND IMMUNITY

Three Paralogous LysR-Type Transcriptional Regulators Control Sulfur Amino Acid Supply in Streptococcus mutans

(2010) B. Sperandio et al.   JOURNAL OF BACTERIOLOGY

Tricarboxylic Acid Cycle-Dependent Synthesis of Staphylococcus aureus Type 5 and 8 Capsular Polysaccharides

(2010) M. R. Sadykov et al.   JOURNAL OF BACTERIOLOGY

Two Spx Proteins Modulate Stress Tolerance, Survival, and Virulence in Streptococcus mutans

(2010) J. K. Kajfasz et al.   JOURNAL OF BACTERIOLOGY

A novel double-tryptophan peptide pheromone controls competence in Streptococcus spp. via an Rgg regulator

(2010) Lauren Mashburn-Warren et al.   MOLECULAR MICROBIOLOGY

Reconstruction of the Core and Extended Regulons of Global Transcription Factors

(2010) Yann S. Dufour et al.   PLoS Genetics

Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology

(2009) P. D. Karp et al.   BRIEFINGS IN BIOINFORMATICS

Inactivation of VicK Affects Acid Production and Acid Survival of Streptococcus mutans

(2009) D. Senadheera et al.   JOURNAL OF BACTERIOLOGY

Multiple Two-Component Systems of Streptococcus mutans Regulate Agmatine Deiminase Gene Expression and Stress Tolerance

(2009) Y. Liu et al.   JOURNAL OF BACTERIOLOGY

Genome-Wide Characterization of the SloR Metalloregulome in Streptococcus mutans

(2009) K. P. O'Rourke et al.   JOURNAL OF BACTERIOLOGY

Characterization of a Glutamate Transporter Operon, glnQHMP, in Streptococcus mutans and Its Role in Acid Tolerance

(2009) K. Krastel et al.   JOURNAL OF BACTERIOLOGY

Reverse engineering and verification of gene networks: Principles, assumptions, and limitations of present methods and future perspectives

(2009) Feng He et al.   JOURNAL OF BIOTECHNOLOGY

Expression of the Streptococcus mutans essential two-component regulatory system VicRK is pH and growth-phase dependent and controlled by the LiaFSR three-component regulatory system

(2009) Y. D. N. Tremblay et al.   MICROBIOLOGY-SGM

Inferring the transcriptional network of Bacillus subtilis

(2009) Abeer Fadda et al.   Molecular BioSystems

RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes

(2009) Pavel S. Novichkov et al.   NUCLEIC ACIDS RESEARCH

Gene Context Analysis in the Integrated Microbial Genomes (IMG) Data Management System

(2009) Konstantinos Mavromatis et al.   PLoS One

CcpA Regulates Central Metabolism and Virulence Gene Expression in Streptococcus mutans

(2008) J. Abranches et al.   JOURNAL OF BACTERIOLOGY

Global Regulation by (p)ppGpp and CodY in Streptococcus mutans

(2008) J. A. Lemos et al.   JOURNAL OF BACTERIOLOGY

Involvement ofStreptococcus mutansregulator RR11 in oxidative stress response during biofilm growth and in the development of genetic competence

(2008) J.A. Perry et al.   LETTERS IN APPLIED MICROBIOLOGY

Evolvability and hierarchy in rewired bacterial gene networks

(2008) Mark Isalan et al.   NATURE

Using RSAT to scan genome sequences for transcription factor binding sites and cis-regulatory modules

(2008) Jean-Valery Turatsinze et al.   Nature Protocols

Tetraalkylammonium derivatives as real-time PCR enhancers and stabilizers of the qPCR mixtures containing SYBR Green I

(2008) G. M. Shaik et al.   NUCLEIC ACIDS RESEARCH

RSAT: regulatory sequence analysis tools

(2008) M. Thomas-Chollier et al.   NUCLEIC ACIDS RESEARCH

Single and multiple input modules in regulatory networks

(2008) Arun S. Konagurthu et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS