Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology

BioMart – biological queries made easy

(2009) Damian Smedley et al.   BMC GENOMICS

Reconstruction of metabolic pathways for the cattle genome

(2009) Seongwon Seo et al.   BMC Systems Biology

Annotation-based inference of transporter function

(2008) Thomas J. Lee et al.   BIOINFORMATICS

Presenting and exploring biological pathways with PathVisio

(2008) Martijn P van Iersel et al.   BMC BIOINFORMATICS

ProdoNet: identification and visualization of prokaryotic gene regulatory and metabolic networks

(2008) Johannes Klein et al.   NUCLEIC ACIDS RESEARCH

KEGG Atlas mapping for global analysis of metabolic pathways

(2008) S. Okuda et al.   NUCLEIC ACIDS RESEARCH

Ensembl 2009

(2008) T. J. P. Hubbard et al.   NUCLEIC ACIDS RESEARCH

PlasmoDB: a functional genomic database for malaria parasites

(2008) C. Aurrecoechea et al.   NUCLEIC ACIDS RESEARCH

Reactome knowledgebase of human biological pathways and processes

(2008) L. Matthews et al.   NUCLEIC ACIDS RESEARCH

EcoCyc: A comprehensive view of Escherichia coli biology

(2008) I. M. Keseler et al.   NUCLEIC ACIDS RESEARCH