Differential expression of endogenous plant cell wall degrading enzyme genes in the stick insect (Phasmatodea) midgut

The polyadenylation code: a unified model for the regulation of mRNA alternative poly adenylation

(2014) Ryan Davis et al.   Journal of Zhejiang University-SCIENCE B

Characterization of Cryptopygus antarcticus Endo-β-1,4-Glucanase from Bombyx mori Expression Systems

(2014) Sun Mee Hong et al.   MOLECULAR BIOTECHNOLOGY

Molecular Evolution of Glycoside Hydrolase Genes in the Western Corn Rootworm (Diabrotica virgifera virgifera)

(2014) Seong-il Eyun et al.   PLoS One

The digestive system of the “stick bug” Cladomorphus phyllinus (Phasmida, Phasmatidae): A morphological, physiological and biochemical analysis

(2013) Emiliano C. Monteiro et al.   ARTHROPOD STRUCTURE & DEVELOPMENT

EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments

(2013) Ning Leng et al.   BIOINFORMATICS

Midgut transcriptome profiling of Anoplophora glabripennis, a lignocellulose degrading cerambycid beetle

(2013) Erin D Scully et al.   BMC GENOMICS

A comparison across non-model animals suggests an optimal sequencing depth for de novo transcriptome assembly

(2013) Warren R Francis et al.   BMC GENOMICS

Assessing De Novo transcriptome assembly metrics for consistency and utility

(2013) Shawn T O’Neil et al.   BMC GENOMICS

Cytochrome P450-encoding genes from theHeliconiusgenome as candidates for cyanogenesis

(2013) R. Chauhan et al.   INSECT MOLECULAR BIOLOGY

Vital staining of the stick insect digestive system identifies appendices of the midgut as novel system of excretion

(2013) Matan Shelomi et al.   JOURNAL OF MORPHOLOGY

Bioinformatics challenges in de novo transcriptome assembly using short read sequences in the absence of a reference genome sequence

(2013) Elsa Góngora-Castillo et al.   NATURAL PRODUCT REPORTS

First Comparative Transcriptomic Analysis of Wild Adult Male and Female Lutzomyia longipalpis, Vector of Visceral Leishmaniasis

(2013) Christina B. McCarthy et al.   PLoS One

Sequencing and De Novo Assembly of the Western Tarnished Plant Bug (Lygus hesperus) Transcriptome

(2013) J. Joe Hull et al.   PLoS One

Simultaneous Transcriptome Analysis of Sorghum and Bipolaris sorghicola by Using RNA-seq in Combination with De Novo Transcriptome Assembly

(2013) Takayuki Yazawa et al.   PLoS One

The genome of the mustard leaf beetle encodes two active xylanases originally acquired from bacteria through horizontal gene transfer

(2013) Y. Pauchet et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Extensive Differences in Gene Expression Between Symbiotic and Aposymbiotic Cnidarians

(2013) Erik M. Lehnert et al.   G3-Genes Genomes Genetics

Combining proteomics and transcriptome sequencing to identify active plant-cell-wall-degrading enzymes in a leaf beetle

(2012) Roy Kirsch et al.   BMC GENOMICS

Challenges and strategies in transcriptome assembly and differential gene expression quantification. A comprehensivein silicoassessment of RNA-seq experiments

(2012) Nagarjun Vijay et al.   MOLECULAR ECOLOGY

ExPASy: SIB bioinformatics resource portal

(2012) P. Artimo et al.   NUCLEIC ACIDS RESEARCH

Insect phylogenomics: results, problems and the impact of matrix composition

(2012) H. O. Letsch et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Advances in Insect Phylogeny at the Dawn of the Postgenomic Era

(2011) Michelle D. Trautwein et al.   Annual Review of Entomology

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

A de novo transcriptome of the Asian tiger mosquito, Aedes albopictus, to identify candidate transcripts for diapause preparation

(2011) Monica F Poelchau et al.   BMC GENOMICS

Advances in ethanol production

(2011) Claudia C Geddes et al.   CURRENT OPINION IN BIOTECHNOLOGY

Cellulolytic environment in the midgut of the wood-feeding higher termite Nasutitermes takasagoensis

(2011) Gaku Tokuda et al.   JOURNAL OF INSECT PHYSIOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

RNA-Seq analysis and de novo transcriptome assembly of Hevea brasiliensis

(2011) Zhihui Xia et al.   PLANT MOLECULAR BIOLOGY

Applications of next generation sequencing in molecular ecology of non-model organisms

(2010) R Ekblom et al.   HEREDITY

cDNA cloning, homology modelling and evolutionary insights into novel endogenous cellulases of the borer beetle Oncideres albomarginata chamela (Cerambycidae)

(2010) N. Calderón-Cortés et al.   INSECT MOLECULAR BIOLOGY

The mitochondrial genome of Bacillus stick insects (Phasmatodea) and the phylogeny of orthopteroid insects

(2010) Federico Plazzi et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Diversity of Beetle Genes Encoding Novel Plant Cell Wall Degrading Enzymes

(2010) Yannick Pauchet et al.   PLoS One

Cellulolytic Systems in Insects

(2009) Hirofumi Watanabe et al.   Annual Review of Entomology

Statistical inferences for isoform expression in RNA-Seq

(2009) Hui Jiang et al.   BIOINFORMATICS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

Bioprospecting metagenomes: glycosyl hydrolases for converting biomass

(2009) Luen-Luen Li et al.   Biotechnology for Biofuels

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

Molecular cloning and characterization of a glycosyl hydrolase family 9 cellulase distributed throughout the digestive tract of the cricket Teleogryllus emma

(2008) Namjung Kim et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY

Immunity or Digestion

(2008) Yannick Pauchet et al.   JOURNAL OF BIOLOGICAL CHEMISTRY