Transcriptome analysis of the filamentous fungus Aspergillus nidulans directed to the global identification of promoters

Trancriptional landscape of Aspergillus niger at breaking of conidial dormancy revealed by RNA-sequencing

(2013) Michaela Novodvorska et al.   BMC GENOMICS

5'-Serial Analysis of Gene Expression studies reveal a transcriptomic switch during fruiting body development in Coprinopsis cinerea

(2013) Chi Keung Cheng et al.   BMC GENOMICS

Germination of conidia of Aspergillus niger is accompanied by major changes in RNA profiles

(2013) M.R. van Leeuwen et al.   STUDIES IN MYCOLOGY

Extensive Transcript Diversity and Novel Upstream Open Reading Frame Regulation in Yeast

(2013) Karl Waern et al.   G3-Genes Genomes Genetics

Pervasive Transcription of the Human Genome Produces Thousands of Previously Unidentified Long Intergenic Noncoding RNAs

(2013) Matthew J. Hangauer et al.   PLoS Genetics

The diverse applications of RNA-seq for functional genomic studies inAspergillus fumigatus

(2012) Antonis Rokas et al.   Annals of the New York Academy of Sciences

Transcriptional Changes in the Transition from Vegetative Cells to Asexual Development in the Model Fungus Aspergillus nidulans

(2012) Aitor Garzia et al.   EUKARYOTIC CELL

Pervasive Antisense Transcription Is Evolutionarily Conserved in Budding Yeast

(2012) A. J. Goodman et al.   MOLECULAR BIOLOGY AND EVOLUTION

Cryptic peroxisomal targeting via alternative splicing and stop codon read-through in fungi

(2012) Johannes Freitag et al.   NATURE

NMD: a multifaceted response to premature translational termination

(2012) Stephanie Kervestin et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Uncovering the Genome-Wide Transcriptional Responses of the Filamentous Fungus Aspergillus niger to Lignocellulose Using RNA Sequencing

(2012) Stéphane Delmas et al.   PLoS Genetics

Identification of alternative splice variants in Aspergillus flavus through comparison of multiple tandem MS search algorithms

(2011) Kung-Yen Chang et al.   BMC GENOMICS

Characteristics of Core Promoter Types with respect to Gene Structure and Expression in Arabidopsis thaliana

(2011) Y. Y. Yamamoto et al.   DNA RESEARCH

Global Transcriptome Changes Underlying Colony Growth in the Opportunistic Human Pathogen Aspergillus fumigatus

(2011) John G. Gibbons et al.   EUKARYOTIC CELL

Transcription ofAspergillus nidulans pacCis modulated by alternative RNA splicing ofpalB

(2011) Glauce L. Trevisan et al.   FEBS LETTERS

Tight control of mycotoxin biosynthesis gene expression in Aspergillus flavus by temperature as revealed by RNA-Seq

(2011) Jiujiang Yu et al.   FEMS MICROBIOLOGY LETTERS

Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88

(2011) M. R. Andersen et al.   GENOME RESEARCH

The bZIP Transcription Factor MeaB Mediates Nitrogen Metabolite Repression at Specific Loci

(2010) Dominik Wagner et al.   EUKARYOTIC CELL

Genome-wide analysis of promoter architecture in Drosophila melanogaster

(2010) R. A. Hoskins et al.   GENOME RESEARCH

Detection of Alternative Splice Variants at the Proteome Level inAspergillus flavus

(2010) Kung-Yen Chang et al.   JOURNAL OF PROTEOME RESEARCH

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Survey of the transcriptome of Aspergillus oryzae via massively parallel mRNA sequencing

(2010) Bin Wang et al.   NUCLEIC ACIDS RESEARCH

Strand-specific RNA sequencing reveals extensive regulated long antisense transcripts that are conserved across yeast species

(2010) Moran Yassour et al.   GENOME BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

SnoRNAs from the filamentous fungus Neurospora crassa: structural, functional and evolutionary insights

(2009) Na Liu et al.   BMC GENOMICS

Evolution and Functions of Long Noncoding RNAs

(2009) Chris P. Ponting et al.   CELL

Regulatory roles of natural antisense transcripts

(2009) Mohammad Ali Faghihi et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Messenger RNA Export from the Nucleus: A Series of Molecular Wardrobe Changes

(2009) Seth M. Kelly et al.   TRAFFIC

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

The effect of temperature on Natural Antisense Transcript (NAT) expression in Aspergillus flavus

(2008) Carrie A. Smith et al.   CURRENT GENETICS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Genomic Islands in the Pathogenic Filamentous Fungus Aspergillus fumigatus

(2008) Natalie D. Fedorova et al.   PLoS Genetics