Identification of alternative splice variants in Aspergillus flavus through comparison of multiple tandem MS search algorithms

Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment

(2011) Jürgen Cox et al.   JOURNAL OF PROTEOME RESEARCH

Detection of Alternative Splice Variants at the Proteome Level inAspergillus flavus

(2010) Kung-Yen Chang et al.   JOURNAL OF PROTEOME RESEARCH

Maximizing the sensitivity and reliability of peptide identification in large-scale proteomic experiments by harnessing multiple search engines

(2010) Wen Yu et al.   PROTEOMICS

An Unsupervised, Model-Free, Machine-Learning Combiner for Peptide Identifications from Tandem Mass Spectra

(2009) Nathan Edwards et al.   Clinical Proteomics

Improving Sensitivity by Probabilistically Combining Results from Multiple MS/MS Search Methodologies

(2008) Brian C. Searle et al.   JOURNAL OF PROTEOME RESEARCH

Temperature-Dependent Regulation of Proteins inAspergillus flavus: Whole Organism Stable Isotope Labeling by Amino Acids

(2008) D. Ryan Georgianna et al.   JOURNAL OF PROTEOME RESEARCH

CDD: specific functional annotation with the Conserved Domain Database

(2008) A. Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

False Discovery Rates and Related Statistical Concepts in Mass Spectrometry-Based Proteomics

(2007) Hyungwon Choi et al.   JOURNAL OF PROTEOME RESEARCH

Assigning Significance to Peptides Identified by Tandem Mass Spectrometry Using Decoy Databases

(2007) Lukas Käll et al.   JOURNAL OF PROTEOME RESEARCH