Gene network inference using continuous time Bayesian networks: a comparative study and application to Th17 cell differentiation
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Title
Gene network inference using continuous time Bayesian networks: a comparative study and application to Th17 cell differentiation
Authors
Keywords
Gene network reconstruction, Time course, Continuous time Bayesian network
Journal
BMC BIOINFORMATICS
Volume 15, Issue 1, Pages -
Publisher
Springer Nature
Online
2014-12-11
DOI
10.1186/s12859-014-0387-x
References
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- (2011) Frank Dondelinger et al. EUPHYTICA
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- Granger Causality and Transfer Entropy Are Equivalent for Gaussian Variables
- (2009) Lionel Barnett et al. PHYSICAL REVIEW LETTERS
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