PuFFIN - a parameter-free method to build nucleosome maps from paired-end reads

Modeling nucleosome position distributions from experimental nucleosome positioning maps

(2013) Robert Schöpflin et al.   BIOINFORMATICS

NucleoFinder: a statistical approach for the detection of nucleosome positions

(2013) J. Becker et al.   BIOINFORMATICS

NSeq: a multithreaded Java application for finding positioned nucleosomes from sequencing data

(2013) Abhinav Nellore et al.   Frontiers in Genetics

DANPOS: Dynamic analysis of nucleosome position and occupancy by sequencing

(2012) K. Chen et al.   GENOME RESEARCH

Micrococcal Nuclease Does Not Substantially Bias Nucleosome Mapping

(2012) James Allan et al.   JOURNAL OF MOLECULAR BIOLOGY

Probabilistic Inference for Nucleosome Positioning with MNase-Based or Sonicated Short-Read Data

(2012) Xuekui Zhang et al.   PLoS One

High-resolution nucleosome mapping reveals transcription-dependent promoter packaging

(2009) A. Weiner et al.   GENOME RESEARCH