NucleoFinder: a statistical approach for the detection of nucleosome positions
Published 2013 View Full Article
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Title
NucleoFinder: a statistical approach for the detection of nucleosome positions
Authors
Keywords
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Journal
BIOINFORMATICS
Volume 29, Issue 6, Pages 711-716
Publisher
Oxford University Press (OUP)
Online
2013-01-09
DOI
10.1093/bioinformatics/bts719
References
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Related references
Note: Only part of the references are listed.- nucleR: a package for non-parametric nucleosome positioning
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- Gene regulation by nucleosome positioning
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- Contribution of histone sequence preferences to nucleosome organization: proposed definitions and methodology
- (2010) Noam Kaplan et al. GENOME BIOLOGY
- High-resolution nucleosome mapping reveals transcription-dependent promoter packaging
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- Nucleosome positioning and gene regulation: advances through genomics
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- Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo
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- Identifying Positioned Nucleosomes with Epigenetic Marks in Human from ChIP-Seq
- (2008) Yong Zhang et al. BMC GENOMICS
- Dynamic Regulation of Nucleosome Positioning in the Human Genome
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- A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning
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- (2008) T. N. Mavrich et al. GENOME RESEARCH
- A multi-layer method to study genome-scale positions of nucleosomes
- (2008) Vito Di Gesù et al. GENOMICS
- The DNA-encoded nucleosome organization of a eukaryotic genome
- (2008) Noam Kaplan et al. NATURE
- Mapping and quantifying mammalian transcriptomes by RNA-Seq
- (2008) Ali Mortazavi et al. NATURE METHODS
- Genomic Sequence Is Highly Predictive of Local Nucleosome Depletion
- (2008) Guo-Cheng Yuan et al. PLoS Computational Biology
- Dynamic Remodeling of Individual Nucleosomes Across a Eukaryotic Genome in Response to Transcriptional Perturbation
- (2008) Sushma Shivaswamy et al. PLOS BIOLOGY
- Distinct Modes of Regulation by Chromatin Encoded through Nucleosome Positioning Signals
- (2008) Yair Field et al. PLoS Computational Biology
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
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