Limitations of Ab Initio Predictions of Peptide Binding to MHC Class II Molecules

Statistical potentials for fold assessment

(2010) Francisco Melo et al.   PROTEIN SCIENCE

The PickPocket method for predicting binding specificities for receptors based on receptor pocket similarities: application to MHC-peptide binding

(2009) Hao Zhang et al.   BIOINFORMATICS

An Autoinhibitory Tyrosine Motif in the Cell-Cycle-Regulated Nek7 Kinase Is Released through Binding of Nek9

(2009) Mark W. Richards et al.   MOLECULAR CELL

NetMHCpan, a method for MHC class I binding prediction beyond humans

(2008) Ilka Hoof et al.   IMMUNOGENETICS

Shift-Invariant Adaptive Double Threading: Learning MHC II–Peptide Binding

(2008) Noah Zaitlen et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Quantitative Predictions of Peptide Binding to Any HLA-DR Molecule of Known Sequence: NetMHCIIpan

(2008) Morten Nielsen et al.   PLoS Computational Biology

A Systematic Assessment of MHC Class II Peptide Binding Predictions and Evaluation of a Consensus Approach

(2008) Peng Wang et al.   PLoS Computational Biology