TranscriptomeBrowser 3.0: introducing a new compendium of molecular interactions and a new visualization tool for the study of gene regulatory networks
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Title
TranscriptomeBrowser 3.0: introducing a new compendium of molecular interactions and a new visualization tool for the study of gene regulatory networks
Authors
Keywords
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Journal
BMC BIOINFORMATICS
Volume 13, Issue 1, Pages 19
Publisher
Springer Nature
Online
2012-01-31
DOI
10.1186/1471-2105-13-19
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Note: Only part of the references are listed.- MIR@NT@N: a framework integrating transcription factors, microRNAs and their targets to identify sub-network motifs in a meta-regulation network model
- (2011) Antony Le Béchec et al. BMC BIOINFORMATICS
- Transcriptomes of the B and T Lineages Compared by Multiplatform Microarray Profiling
- (2011) M. W. Painter et al. JOURNAL OF IMMUNOLOGY
- ChEA: transcription factor regulation inferred from integrating genome-wide ChIP-X experiments
- (2010) Alexander Lachmann et al. BIOINFORMATICS
- Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data
- (2010) R. Pique-Regi et al. GENOME RESEARCH
- Visualization of omics data for systems biology
- (2010) Nils Gehlenborg et al. NATURE METHODS
- MatrixDB, the extracellular matrix interaction database
- (2010) E. Chautard et al. NUCLEIC ACIDS RESEARCH
- NCBI GEO: archive for functional genomics data sets--10 years on
- (2010) T. Barrett et al. NUCLEIC ACIDS RESEARCH
- The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function
- (2010) David Warde-Farley et al. NUCLEIC ACIDS RESEARCH
- The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored
- (2010) D. Szklarczyk et al. NUCLEIC ACIDS RESEARCH
- Reactome: a database of reactions, pathways and biological processes
- (2010) D. Croft et al. NUCLEIC ACIDS RESEARCH
- Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project
- (2010) M. B. Gerstein et al. SCIENCE
- Evaluation of linguistic features useful in extraction of interactions from PubMed; Application to annotating known, high-throughput and predicted interactions in I2D
- (2009) Yun Niu et al. BIOINFORMATICS
- KEA: kinase enrichment analysis
- (2009) A. Lachmann et al. BIOINFORMATICS
- ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks
- (2009) Gabriela Bindea et al. BIOINFORMATICS
- Logical modelling of regulatory networks with GINsim 2.3
- (2009) A. Naldi et al. BIOSYSTEMS
- MINT, the molecular interaction database: 2009 update
- (2009) Arnaud Ceol et al. NUCLEIC ACIDS RESEARCH
- MotifMap: a human genome-wide map of candidate regulatory motif sites
- (2008) Xiaohui Xie et al. BIOINFORMATICS
- Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells
- (2008) Xi Chen et al. CELL
- De novo DNA synthesis using single molecule PCR
- (2008) Tuval Ben Yehezkel et al. NUCLEIC ACIDS RESEARCH
- RSAT: regulatory sequence analysis tools
- (2008) M. Thomas-Chollier et al. NUCLEIC ACIDS RESEARCH
- Human Protein Reference Database--2009 update
- (2008) T. S. Keshava Prasad et al. NUCLEIC ACIDS RESEARCH
- UniPROBE: an online database of protein binding microarray data on protein-DNA interactions
- (2008) D. E. Newburger et al. NUCLEIC ACIDS RESEARCH
- TranscriptomeBrowser: A Powerful and Flexible Toolbox to Explore Productively the Transcriptional Landscape of the Gene Expression Omnibus Database
- (2008) Fabrice Lopez et al. PLoS One
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