High-performance prediction of functional residues in proteins with machine learning and computed input features

Engineering the Enolase Magnesium II Binding Site: Implications for Its Evolution

(2010) Bettina Schreier et al.   BIOCHEMISTRY

Active site prediction using evolutionary and structural information

(2010) Sriram Sankararaman et al.   BIOINFORMATICS

High Conservation of Amino Acids with Anomalous Protonation Behavior

(2010) David G.C. Hildebrand et al.   Current Bioinformatics

FUNCTIONAL CLASSIFICATION OF PROTEIN 3D STRUCTURES FROM PREDICTED LOCAL INTERACTION SITES

(2010) RAMYA PARASURAM et al.   Journal of Bioinformatics and Computational Biology

ResBoost: characterizing and predicting catalytic residues in enzymes

(2009) Ron Alterovitz et al.   BMC BIOINFORMATICS

SitesIdentify: a protein functional site prediction tool

(2009) Tracey Bray et al.   BMC BIOINFORMATICS

FINDSITE: a combined evolution/structure-based approach to protein function prediction

(2009) J. Skolnick et al.   BRIEFINGS IN BIOINFORMATICS

INTREPID: a web server for prediction of functionally important residues by evolutionary analysis

(2009) S. Sankararaman et al.   NUCLEIC ACIDS RESEARCH

PSI-2: Structural Genomics to Cover Protein Domain Family Space

(2009) Benoît H. Dessailly et al.   STRUCTURE

Predicting Protein Ligand Binding Sites by Combining Evolutionary Sequence Conservation and 3D Structure

(2009) John A. Capra et al.   PLoS Computational Biology

Partial Order Optimum Likelihood (POOL): Maximum Likelihood Prediction of Protein Active Site Residues Using 3D Structure and Sequence Properties

(2009) Wenxu Tong et al.   PLoS Computational Biology

Crystal structure of Mycobacterium tuberculosis Rv0760c at 1.50 Å resolution, a structural homolog of Δ5-3-ketosteroid isomerase

(2008) Maia M. Cherney et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

INTREPID—INformation-theoretic TREe traversal for Protein functional site IDentification

(2008) Sriram Sankararaman et al.   BIOINFORMATICS

Enhanced performance in prediction of protein active sites with THEMATICS and support vector machines

(2007) Wenxu Tong et al.   PROTEIN SCIENCE