Predicting Protein Ligand Binding Sites by Combining Evolutionary Sequence Conservation and 3D Structure

Partial Order Optimum Likelihood (POOL): Maximum Likelihood Prediction of Protein Active Site Residues Using 3D Structure and Sequence Properties

(2009) Wenxu Tong et al.   PLoS Computational Biology

INTREPID—INformation-theoretic TREe traversal for Protein functional site IDentification

(2008) Sriram Sankararaman et al.   BIOINFORMATICS

Predicting small ligand binding sites in proteins using backbone structure

(2008) Andrew J. Bordner   BIOINFORMATICS

Improving position-specific predictions of protein functional sites using phylogenetic motifs

(2008) K. C. Dukka Bahadur et al.   BIOINFORMATICS

Characterization and prediction of residues determining protein functional specificity

(2008) John A. Capra et al.   BIOINFORMATICS

Prediction of protein functional residues from sequence by probability density estimation

(2008) J. D. Fischer et al.   BIOINFORMATICS

Crystal Structures of the Streptomyces coelicolor TetR-Like Protein ActR Alone and in Complex with Actinorhodin or the Actinorhodin Biosynthetic Precursor (S)-DNPA

(2008) A.R. Willems et al.   JOURNAL OF MOLECULAR BIOLOGY

Detection of Functionally Important Regions in “Hypothetical Proteins” of Known Structure

(2008) Guy Nimrod et al.   STRUCTURE

Protein Meta-Functional Signatures from Combining Sequence, Structure, Evolution, and Amino Acid Property Information

(2008) Kai Wang et al.   PLoS Computational Biology