NeuroGPS: automated localization of neurons for brain circuits using L1 minimization model

Continuously tracing brain-wide long-distance axonal projections in mice at a one-micron voxel resolution

(2013) Hui Gong et al.   NEUROIMAGE

Computational methods and challenges for large-scale circuit mapping

(2012) Moritz Helmstaedter et al.   CURRENT OPINION IN NEUROBIOLOGY

Serial two-photon tomography for automated ex vivo mouse brain imaging

(2012) Timothy Ragan et al.   NATURE METHODS

Confocal light sheet microscopy: micron-scale neuroanatomy of the entire mouse brain

(2012) L. Silvestri et al.   OPTICS EXPRESS

Automatic Extraction of Nuclei Centroids of Mouse Embryonic Cells from Fluorescence Microscopy Images

(2012) Md. Khayrul Bashar et al.   PLoS One

Automatic Reconstruction of Neural Morphologies with Multi-Scale Tracking

(2012) Anna Choromanska et al.   Frontiers in Neural Circuits

Detection and Segmentation of Cell Nuclei in Virtual Microscopy Images: A Minimum-Model Approach

(2012) Stephan Wienert et al.   Scientific Reports

High-throughput Computer Method for 3D Neuronal Structure Reconstruction from the Image Stack of the Drosophila Brain and Its Applications

(2012) Ping-Chang Lee et al.   PLoS Computational Biology

Three-dimensional segmentation of nuclei and mitotic chromosomes for the study of cell divisions in live Drosophila embryos

(2011) Rambabu Chinta et al.   CYTOMETRY PART A

Robust Segmentation of Overlapping Cells in Histopathology Specimens Using Parallel Seed Detection and Repulsive Level Set

(2011) Xin Qi et al.   IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING

An automatic segmentation algorithm for 3D cell cluster splitting using volumetric confocal images

(2011) C. INDHUMATHI et al.   JOURNAL OF MICROSCOPY

Principal Curves as Skeletons of Tubular Objects

(2011) Erhan Bas et al.   NEUROINFORMATICS

Neuronal Tracing for Connectomic Studies

(2011) Ju Lu   NEUROINFORMATICS

A Brief History of Neuronal Reconstruction

(2011) Stephen L. Senft   NEUROINFORMATICS

A Broadly Applicable 3-D Neuron Tracing Method Based on Open-Curve Snake

(2011) Yu Wang et al.   NEUROINFORMATICS

Automated Reconstruction of Neuronal Morphology Based on Local Geometrical and Global Structural Models

(2011) Ting Zhao et al.   NEUROINFORMATICS

The Big and the Small: Challenges of Imaging the Brain's Circuits

(2011) J. W. Lichtman et al.   SCIENCE

Neuron tracing in perspective

(2010) Erik Meijering   CYTOMETRY PART A

V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets

(2010) Hanchuan Peng et al.   NATURE BIOTECHNOLOGY

Micro-Optical Sectioning Tomography to Obtain a High-Resolution Atlas of the Mouse Brain

(2010) A. Li et al.   SCIENCE

Improved Automatic Detection and Segmentation of Cell Nuclei in Histopathology Images

(2009) Y. Al-Kofahi et al.   IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING

Correlations of Neuronal and Microvascular Densities in Murine Cortex Revealed by Direct Counting and Colocalization of Nuclei and Vessels

(2009) P. S. Tsai et al.   JOURNAL OF NEUROSCIENCE

A 3D digital atlas of C. elegans and its application to single-cell analyses

(2009) Fuhui Long et al.   NATURE METHODS

Adult SVZ Stem Cells Lie in a Vascular Niche: A Quantitative Analysis of Niche Cell-Cell Interactions

(2008) Qin Shen et al.   Cell Stem Cell

Enhancing Sparsity by Reweighted ℓ 1 Minimization

(2008) Emmanuel J. Candès et al.   JOURNAL OF FOURIER ANALYSIS AND APPLICATIONS

Associative image analysis: A method for automated quantification of 3D multi-parameter images of brain tissue

(2008) Christopher S. Bjornsson et al.   JOURNAL OF NEUROSCIENCE METHODS

An Automated Method for Cell Detection in Zebrafish

(2008) Tianming Liu et al.   NEUROINFORMATICS

Fast, bias-free algorithm for tracking single particles with variable size and shape

(2008) Andrew J. Berglund et al.   OPTICS EXPRESS