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Title
Big data and other challenges in the quest for orthologs
Authors
Keywords
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Journal
BIOINFORMATICS
Volume 30, Issue 21, Pages 2993-2998
Publisher
Oxford University Press (OUP)
Online
2014-07-27
DOI
10.1093/bioinformatics/btu492
References
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Related references
Note: Only part of the references are listed.- The EBI RDF platform: linked open data for the life sciences
- (2014) S. Jupp et al. BIOINFORMATICS
- Gene Family Level Comparative Analysis of Gene Expression in Mammals Validates the Ortholog Conjecture
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- Functional and evolutionary implications of gene orthology
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- (2013) Roland Arnold et al. NUCLEIC ACIDS RESEARCH
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- PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome
- (2013) Jaime Huerta-Cepas et al. NUCLEIC ACIDS RESEARCH
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- (2013) Daniel A. Dalquen et al. PLoS One
- Inferring Hierarchical Orthologous Groups from Orthologous Gene Pairs
- (2013) Adrian M. Altenhoff et al. PLoS One
- Toward community standards in the quest for orthologs
- (2012) C. Dessimoz et al. BIOINFORMATICS
- OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs
- (2012) Robert M. Waterhouse et al. NUCLEIC ACIDS RESEARCH
- PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees
- (2012) Huaiyu Mi et al. NUCLEIC ACIDS RESEARCH
- On the Use of Gene Ontology Annotations to Assess Functional Similarity among Orthologs and Paralogs: A Short Report
- (2012) Paul D. Thomas et al. PLoS Computational Biology
- The Ortholog Conjecture Is Untestable by the Current Gene Ontology but Is Supported by RNA Sequencing Data
- (2012) Xiaoshu Chen et al. PLoS Computational Biology
- Resolving the Ortholog Conjecture: Orthologs Tend to Be Weakly, but Significantly, More Similar in Function than Paralogs
- (2012) Adrian M. Altenhoff et al. PLoS Computational Biology
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- (2011) Kristoffer Forslund et al. BMC BIOINFORMATICS
- Ortholog identification in the presence of domain architecture rearrangement
- (2011) K. Sjolander et al. BRIEFINGS IN BIOINFORMATICS
- Conceptual framework and pilot study to benchmark phylogenomic databases based on reference gene trees
- (2011) B. Boeckmann et al. BRIEFINGS IN BIOINFORMATICS
- Evidence for short-time divergence and long-time conservation of tissue-specific expression after gene duplication
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- Letter to the Editor: SeqXML and OrthoXML: standards for sequence and orthology information
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- Evolution at the Subgene Level: Domain Rearrangements in the Drosophila Phylogeny
- (2011) Y.-C. Wu et al. MOLECULAR BIOLOGY AND EVOLUTION
- Reorganizing the protein space at the Universal Protein Resource (UniProt)
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- Strong functional patterns in the evolution of eukaryotic genomes revealed by the reconstruction of ancestral protein domain repertoires
- (2011) Christian M Zmasek et al. GENOME BIOLOGY
- MetaPhOrs: orthology and paralogy predictions from multiple phylogenetic evidence using a consistency-based confidence score
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- Infrastructure for the life sciences: design and implementation of the UniProt website
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- How confident can we be that orthologs are similar, but paralogs differ?
- (2009) Romain A. Studer et al. TRENDS IN GENETICS
- Joining forces in the quest for orthologs
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- Horizontal gene transfer in eukaryotic evolution
- (2008) Patrick J. Keeling et al. NATURE REVIEWS GENETICS
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