Inferring Hierarchical Orthologous Groups from Orthologous Gene Pairs
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Title
Inferring Hierarchical Orthologous Groups from Orthologous Gene Pairs
Authors
Keywords
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Journal
PLoS One
Volume 8, Issue 1, Pages e53786
Publisher
Public Library of Science (PLoS)
Online
2013-01-15
DOI
10.1371/journal.pone.0053786
References
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Related references
Note: Only part of the references are listed.- Orthology prediction methods: A quality assessment using curated protein families
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- Computational methods for Gene Orthology inference
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- ALF—A Simulation Framework for Genome Evolution
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- Representative Proteomes: A Stable, Scalable and Unbiased Proteome Set for Sequence Analysis and Functional Annotation
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- A low-polynomial algorithm for assembling clusters of orthologous groups from intergenomic symmetric best matches
- (2010) David M. Kristensen et al. BIOINFORMATICS
- OrthoDB: the hierarchical catalog of eukaryotic orthologs in 2011
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- OMA 2011: orthology inference among 1000 complete genomes
- (2010) A. M. Altenhoff et al. NUCLEIC ACIDS RESEARCH
- InParanoid 7: new algorithms and tools for eukaryotic orthology analysis
- (2009) G. Ostlund et al. NUCLEIC ACIDS RESEARCH
- Phylogenetic and Functional Assessment of Orthologs Inference Projects and Methods
- (2009) Adrian M. Altenhoff et al. PLoS Computational Biology
- Algorithm of OMA for large-scale orthology inference
- (2008) Alexander CJ Roth et al. BMC BIOINFORMATICS
- EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates
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