Measuring and comparing structural fluctuation patterns in large protein datasets

Dynamics based alignment of proteins: an alternative approach to quantify dynamic similarity

(2012) M�rton M�nz et al.   BMC BIOINFORMATICS

Coherent Conformational Degrees of Freedom as a Structural Basis for Allosteric Communication

(2011) Simon Mitternacht et al.   PLoS Computational Biology

Binding Leverage as a Molecular Basis for Allosteric Regulation

(2011) Simon Mitternacht et al.   PLoS Computational Biology

Global Dynamics of Proteins: Bridging Between Structure and Function

(2010) Ivet Bahar et al.   Annual Review of Biophysics

ALADYN: a web server for aligning proteins by matching their large-scale motion

(2010) R. Potestio et al.   NUCLEIC ACIDS RESEARCH

Exploring the factors determining the dynamics of different protein folds

(2010) S. M. Hollup et al.   PROTEIN SCIENCE

Large-scale comparison of protein essential dynamics from molecular dynamics simulations and coarse-grained normal mode analyses

(2010) Aqeel Ahmed et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Principal component and normal mode analysis of proteins; a quantitative comparison using the GroEL subunit

(2010) Lars Skjaerven et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Deciphering the Deformation Modes Associated with Function Retention and Specialization in Members of the Ras Superfamily

(2010) Francesco Raimondi et al.   STRUCTURE

Using dynamics-based comparisons to predict nucleic acid binding sites in proteins: an application to OB-fold domains

(2009) Andrea Zen et al.   BIOINFORMATICS

A perturbative view of protein structural variation

(2009) Julián Echave et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

ROC analysis: applications to the classification of biological sequences and 3D structures

(2008) P. Sonego et al.   BRIEFINGS IN BIOINFORMATICS

Evolutionary conservation of protein vibrational dynamics

(2008) Sandra Maguid et al.   GENE

Correspondences between low-energy modes in enzymes: Dynamics-based alignment of enzymatic functional families

(2008) Andrea Zen et al.   PROTEIN SCIENCE

Close Correspondence between the Motions from Principal Component Analysis of Multiple HIV-1 Protease Structures and Elastic Network Modes

(2008) Lei Yang et al.   STRUCTURE