Dynamics based alignment of proteins: an alternative approach to quantify dynamic similarity

Using dynamics-based comparisons to predict nucleic acid binding sites in proteins: an application to OB-fold domains

(2009) Andrea Zen et al.   BIOINFORMATICS

Conservation of Side-Chain Dynamics Within a Protein Family

(2009) Anthony B. Law et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

One membrane protein, two structures and six environments: a comparative molecular dynamics simulation study of the bacterial outer membrane protein PagP

(2009) Katherine Cox et al.   MOLECULAR MEMBRANE BIOLOGY

Sending Signals Dynamically

(2009) R. G. Smock et al.   SCIENCE

Flexibility of the MHC class II peptide binding cleft in the bound, partially filled, and empty states: A molecular dynamics simulation study

(2008) Rakina Yaneva et al.   BIOPOLYMERS

Predicting PDZ domain–peptide interactions from primary sequences

(2008) Jiunn R Chen et al.   NATURE BIOTECHNOLOGY

Correspondences between low-energy modes in enzymes: Dynamics-based alignment of enzymatic functional families

(2008) Andrea Zen et al.   PROTEIN SCIENCE

A Specificity Map for the PDZ Domain Family

(2008) Raffi Tonikian et al.   PLOS BIOLOGY